Structural Classification of Proteins

Superfamily: PFL-like glycyl radical enzymes

: duplication: the N- and C-terminal halves have similar topologies
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: PFL-like glycyl radical enzymes [51997]
contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
Superfamily: PFL-like glycyl radical enzymes [51998]
duplication: the N- and C-terminal halves have similar topologies
uperfamily

Families:

PFL-like [51999] (2)
Pfam 02901; except the C-terminal ~100 residues covered by Pfam 01228
1. Pyruvate formate-lyase, PFL [52000]
  1. Escherichia coli [TaxId: 562] [52001] (8)
    1. 1h16
      complexed with coa, dtl, mg, na, pg4, pyr
      1. chain a [76462]
    2. 1h17
      complexed with coa, dtl, mg, na, oxm, pg4
      1. chain a [76463]
    3. 1h18
      complexed with dtl, na, pg4, pyr
      1. chain a [76464]
      2. chain b [76465]
    4. 1cm5
      1. chain a [30671]
      2. chain b [30672]
    5. 1mzo
      complexed with pge, pyr
      1. chain a [79708]
      2. chain b [79709]
    6. 3pfl
      complexed with oxm
      1. chain a [30673]
      2. chain b [30674]
    7. 2pfl
      1. chain a [30675]
      2. chain b [30676]
    8. 1qhm
      1. chain a [30677]
      2. chain b [30678]
2. Glycerol dehydratase DhaB1 [110445]
  1. Clostridium butyricum [TaxId: 1492] [110446] (3)
    SQ Q8GEZ8
    1. 1r9d
      complexed with gol
      1. chain a [104865]
      2. chain b [104866]
    2. 1r9e
      complexed with pgo
      1. chain a [104867]
      2. chain b [104868]
    3. 1r8w
      1. chain a [104853]
      2. chain b [104854]
R1 subunit of ribonucleotide reductase, C-terminal domain [52002] (2)
1. R1 subunit of ribonucleotide reductase, C-terminal domain [52003]
  1. Escherichia coli [TaxId: 562] [52004] (8)
    1. 1rlr
      1. region a:222-748 [30679]
    2. 1r1r
      mutant
      1. region a:222-737 [30680]
      2. region b:222-737 [30681]
      3. region c:222-737 [30682]
    3. 5r1r
      mutant
      1. region a:222-738 [30683]
      2. region b:222-738 [30684]
      3. region c:222-738 [30685]
    4. 6r1r
      mutant
      1. region a:222-738 [30686]
      2. region b:222-738 [30687]
      3. region c:222-738 [30688]
    5. 7r1r
      mutant
      1. region a:222-738 [30689]
      2. region b:222-738 [30690]
      3. region c:222-738 [30691]
    6. 2r1r
      complexed with ttp
      1. region a:222-737 [30695]
      2. region b:222-737 [30696]
      3. region c:222-737 [30697]
    7. 3r1r
      complexed with atp
      1. region a:222-737 [30692]
      2. region b:222-737 [30693]
      3. region c:222-737 [30694]
    8. 4r1r
      complexed with gdp, ttp; mutant
      1. region a:222-737 [30698]
      2. region b:222-737 [30699]
      3. region c:222-737 [30700]
  2. Salmonella typhimurium [TaxId: 90371] [110447] (6)
    SQ Q08698
    1. 1peq
      complexed with mg, ttp
      1. region a:175-699 [104132]
    2. 1pem
      1. region a:175-699 [104128]
    3. 1peo
      complexed with dcp, mg
      1. region a:175-699 [104130]
    4. 1peu
      complexed with dtp, mg
      1. region a:175-699 [104134]
    5. 2bq1
      automatically matched to d1pema2
      complexed with dgt, fe, mg
      1. region e:175-699 [128954]
    6. 2bq1
      automatically matched to d1pema2
      complexed with dgt, fe, mg
      1. region f:175-699 [128956]
B12-dependent (class II) ribonucleotide reductase [75131] (1)
1. B12-dependent (class II) ribonucleotide reductase [75132]
  1. Lactobacillus leichmannii [TaxId: 28039] [75133] (1)
    1. 1l1l
      mutant
      1. chain a [73470]
      2. chain b [73471]
      3. chain c [73472]
      4. chain d [73473]
Class III anaerobic ribonucleotide reductase NRDD subunit [52005] (1)
1. Class III anaerobic ribonucleotide reductase NRDD subunit [52006]
  1. Bacteriophage T4 [TaxId: 10665] [52007] (5)
    1. 1hk8
      complexed with dgt, mn, zn; mutant
      1. chain a [83540]
    2. 1h7b
      complexed with po4; mutant
      1. chain a [70913]
    3. 1h78
      complexed with dcp, mg; mutant
      1. chain a [70910]
    4. 1h7a
      complexed with dtp, fe2, mg; mutant
      1. chain a [70912]
    5. 1h79
      complexed with fe2, mg, ttp; mutant
      1. chain a [70911]
SP0239-like [159444] (1)
Pfam 05167; DUF771
1. Uncharacterized protein SP0239 [159445]
  1. Streptococcus pneumoniae [TaxId: 1313] [159446] (2)
    SQ Q97ST4 1-440
    1. 2ha9
      1. region a:1-440 [147251]
    2. 2ha9
      automatically matched to 2HA9 A:1-440
      1. region b:1-440 [147252]