Structural Classification of Proteins
home mail help root up expand collapse

Fold: TK C-terminal domain-like

3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TK C-terminal domain-like [52921]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest

Superfamilies:

  1. TK C-terminal domain-like [52922] (3)
    link to SUPERFAMILY database - Superfamily
    1. Transketolase C-terminal domain-like [52923] (5)
      1. Transketolase (TK), C-domain [52924]
        two N-terminal domains are PP and Pyr modules of thiamin-binding fold
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [52925] (7)
          1. 1gpu picpicxrefxref
            complexed with ca, thd
            1. region a:535-680 [65456] picpiclink
            2. region b:535-680 [65459] picpiclink
          2. 1trk picpicxrefxref
            complexed with ca, tpp
            1. region a:535-680 [33090] picpiclink
            2. region b:535-680 [33091] picpiclink
          3. 1tkb picpicxrefxref
            complexed with ca, n1t
            1. region a:535-680 [33092] picpiclink
            2. region b:535-680 [33093] picpiclink
          4. 1tkc picpicxrefxref
            complexed with ca, m6t
            1. region a:535-680 [33094] picpiclink
            2. region b:535-680 [33095] picpiclink
          5. 1ngs picpicxrefxref
            complexed with ca, e4p, tpp
            1. region a:535-680 [33098] picpiclink
            2. region b:535-680 [33099] picpiclink
          6. 1tka picpicxrefxref
            complexed with ca, n3t
            1. region a:535-680 [33096] picpiclink
            2. region b:535-680 [33097] picpiclink
          7. 1ay0 picpicxrefxref
            complexed with ca, tpp; mutant
            1. region a:535-680 [33100] picpiclink
            2. region b:535-680 [33101] picpiclink
        2. Maize (Zea mays) [TaxId: 4577] [82430] (1)
          1. 1itz picpicxrefxref
            complexed with mg, tpp
            1. region a:540-675 [76799] picpiclink
            2. region b:540-675 [76802] picpiclink
            3. region c:540-675 [76805] picpiclink
        3. Escherichia coli [TaxId: 562] [89712] (7)
          1. 2r8o picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, t5x
            1. region a:528-663 [151733] picpiclink
          2. 2r8o picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, t5x
            1. region b:528-663 [151736] picpiclink
          3. 2r5n picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, r5p, rp5, tpp
            1. region a:528-663 [151593] picpiclink
          4. 2r5n picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, r5p, rp5, tpp
            1. region b:528-663 [151596] picpiclink
          5. 2r8p picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, t6f
            1. region a:528-663 [151739] picpiclink
          6. 2r8p picpicxrefxrefxrefxref
            automatically matched to d1qgda3
            complexed with ca, edo, t6f
            1. region b:528-663 [151742] picpiclink
          7. 1qgd picpicxrefxref
            complexed with ca, so4, tpp
            1. region a:528-663 [88369] picpiclink
            2. region b:528-663 [88372] picpiclink
        4. Leishmania mexicana mexicana [TaxId: 44270] [117610] (1)
          SQ Q8MPM3
          1. 1r9j picpicxrefxref
            complexed with ca, tpp
            1. region a:527-669 [111724] picpiclink
            2. region b:527-669 [111727] picpiclink
      2. Pyruvate dehydrogenase E1 component, C-domain [75239]
        E1A and E1B fused together in a single-chain protein
        1. Escherichia coli [TaxId: 562] [75240] (14)
          1. 2iea picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdp
            1. region a:701-886 [137296] picpiclink
          2. 2iea picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdp
            1. region b:701-886 [137299] picpiclink
          3. 2qta picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdp; mutant
            1. region a:701-886 [151335] picpiclink
          4. 2qta picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdp; mutant
            1. region b:701-886 [151338] picpiclink
          5. 2qtc picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdk; mutant
            1. region a:701-886 [151345] picpiclink
          6. 2qtc picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdk; mutant
            1. region b:701-886 [151348] picpiclink
          7. 1l8a picpicxrefxref
            complexed with mg, tdp
            1. region a:701-886 [73679] picpiclink
            2. region b:701-886 [73682] picpiclink
          8. 2g28 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdk
            1. region a:701-886 [134531] picpiclink
          9. 2g28 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, tdk
            1. region b:701-886 [134534] picpiclink
          10. 2g25 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, po4, tdk
            1. region a:701-886 [134525] picpiclink
          11. 2g25 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            complexed with mg, po4, tdk
            1. region b:701-886 [134528] picpiclink
          12. 1rp7 picpicxrefxref
            complexed with mg, tzd
            1. region a:701-886 [97704] picpiclink
            2. region b:701-886 [97707] picpiclink
          13. 2g67 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            1. region a:701-886 [134697] picpiclink
          14. 2g67 picpicxrefxrefxrefxref
            automatically matched to d1l8aa3
            1. region b:701-886 [134700] picpiclink
    2. Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain [52926] (6)
      1. Branched-chain alpha-keto acid dehydrogenase [52927]
        1. Human (Homo sapiens) [TaxId: 9606] [52928] (21)
          SQ P21953 52-392
          1. 2bfd picpicxrefxref
            automatically matched to d1dtwb2
            complexed with cl, gol, k, mn, mpd, tdp; mutant
            1. region b:205-342 [128420] picpiclink
          2. 2bff picpicxrefxref
            automatically matched to d1dtwb2
            complexed with gol, k, mn, tzd
            1. region b:205-342 [128422] picpiclink
          3. 1x7y picpicxrefxref
            complexed with cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [114946] picpiclink
          4. 2bfc picpicxrefxref
            automatically matched to d1dtwb2
            complexed with gol, k, mn, tzd; mutant
            1. region b:205-342 [128418] picpiclink
          5. 1x7z picpicxrefxref
            complexed with cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [114949] picpiclink
          6. 1x7w picpicxrefxref
            complexed with cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [114940] picpiclink
          7. 2bev picpicxrefxref
            automatically matched to d1dtwb2
            complexed with cl, gol, k, mn, thy
            1. region b:205-342 [128394] picpiclink
          8. 2bew picpicxrefxref
            automatically matched to d1dtwb2
            complexed with cl, gol, k, mn, thw
            1. region b:205-342 [128397] picpiclink
          9. 1v16 picpicxrefxref
            complexed with bdn, cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [108242] picpiclink
          10. 1wci picpicxrefxref
            automatically matched to d1dtwb2
            complexed with cl, gol, k, mn, wwf
            1. region b:205-342 [120892] picpiclink
          11. 1u5b picpicxrefxref
            complexed with gol, k, mn, tdp
            1. region b:205-342 [113036] picpiclink
          12. 1v1r picpicxrefxref
            complexed with cl, gol, k, na, so4
            1. region b:205-342 [108274] picpiclink
          13. 1olu picpicxrefxref
            complexed with gol, k, mg, tdp; mutant
            1. region b:205-342 [93337] picpiclink
          14. 1v11 picpicxrefxref
            complexed with bdn, cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [108229] picpiclink
          15. 1ols picpicxrefxref
            complexed with gol, k, mn, tdp
            1. region b:205-342 [93333] picpiclink
          16. 1v1m picpicxrefxref
            complexed with bdn, cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [108263] picpiclink
          17. 2beu picpicxrefxref
            automatically matched to d1dtwb2
            complexed with cl, gol, k, mn, so4, thv
            1. region b:205-342 [128391] picpiclink
          18. 1x80 picpicxrefxref
            complexed with cl, gol, k, mn, tdp
            1. region b:205-342 [114952] picpiclink
          19. 1x7x picpicxrefxref
            complexed with cl, gol, k, mn, tdp; mutant
            1. region b:205-342 [114943] picpiclink
          20. 1olx picpicxrefxref
            complexed with gol, k, mn, tdp; mutant
            1. region b:205-342 [93340] picpiclink
          21. 1dtw picpicxrefxref
            complexed with k, mg, tdp
            1. region b:205-342 [33102] picpiclink
        2. Thermus thermophilus [TaxId: 274] [102468] (4)
          1. 1umd picpicxrefxref
            complexed with coi, mg, tdp
            1. region b:188-324 [99601] picpiclink
            2. region d:188-324 [99604] picpiclink
          2. 1umb picpicxrefxref
            complexed with mg, tdp
            1. region b:188-324 [99589] picpiclink
            2. region d:188-324 [99592] picpiclink
          3. 1um9 picpicxrefxref
            complexed with so4
            1. region b:188-324 [99583] picpiclink
            2. region d:188-324 [99586] picpiclink
          4. 1umc picpicxrefxref
            complexed with 4mv, mg, tdp
            1. region b:188-324 [99595] picpiclink
            2. region d:188-324 [99598] picpiclink
      2. 2-oxoisovalerate dehydrogenase E1b, C-domain [52929]
        1. Pseudomonas putida [TaxId: 303] [52930] (5)
          1. 1qs0 picpicxrefxref
            complexed with hri, mg, tdp
            1. region b:206-339 [33103] picpiclink
          2. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1qs0b2
            1. region b:206-339 [128928] picpiclink
          3. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1qs0b2
            1. region d:206-339 [128931] picpiclink
          4. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1qs0b2
            1. region f:206-339 [128934] picpiclink
          5. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1qs0b2
            1. region h:206-339 [128937] picpiclink
      3. E1-beta subunit of pyruvate dehydrogenase, C-domain [69521]
        1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [69522] (1)
          1. 1ik6 picpicxref
            1. region a:192-326 [66175] picpiclink
        2. Human (Homo sapiens) [TaxId: 9606] [89713] (3)
          1. 2ozl picpicxrefxrefxrefxref
            automatically matched to d1ni4b2
            complexed with k, mg, tpp; mutant
            1. region b:192-329 [139448] picpiclink
          2. 2ozl picpicxrefxrefxrefxref
            automatically matched to d1ni4b2
            complexed with k, mg, tpp; mutant
            1. region d:192-329 [139450] picpiclink
          3. 1ni4 picpicxrefxref
            complexed with k, mg, mse, tpp; mutant
            1. region b:192-329 [85730] picpiclink
            2. region d:192-329 [85733] picpiclink
      4. Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain [117611]
        1. Bacillus stearothermophilus [TaxId: 1422] [117612] (2)
          SQ P21874
          1. 1w85 picpicxrefxrefxref
            complexed with k, mg, peg, tdp
            1. region b:193-324 [114337] picpiclink
            2. region d:193-324 [114340] picpiclink
            3. region f:193-324 [114343] picpiclink
            4. region h:193-324 [114346] picpiclink
          2. 1w88 picpicxrefxrefxref
            complexed with mg, tdp; mutant
            1. region b:193-324 [114351] picpiclink
            2. region d:193-324 [114354] picpiclink
            3. region f:193-324 [114357] picpiclink
            4. region h:193-324 [114360] picpiclink
    3. Pyruvate-ferredoxin oxidoreductase, PFOR, domain II [52931] (1)
      1. Pyruvate-ferredoxin oxidoreductase, PFOR, domain II [52932]
        1. Desulfovibrio africanus [TaxId: 873] [52933] (17)
          1. 2c42 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, mg, pyr, sf4, tpp
            1. region a:259-415 [129792] picpiclink
          2. 2c42 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, mg, pyr, sf4, tpp
            1. region b:259-415 [129797] picpiclink
          3. 2c3m picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, cl, mg, sf4, tpp
            1. region a:259-415 [129742] picpiclink
          4. 2c3m picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, cl, mg, sf4, tpp
            1. region b:259-415 [129747] picpiclink
          5. 2c3y picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, co2, htl, mg, sf4
            1. region a:259-415 [129782] picpiclink
          6. 2c3y picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, co2, htl, mg, sf4
            1. region b:259-415 [129787] picpiclink
          7. 1kek picpicxrefxrefxrefxref
            complexed with ca, co2, fs4, htl, mg
            1. region a:259-415 [68526] picpiclink
            2. region b:259-415 [68531] picpiclink
          8. 2c3p picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with 1tp, ca, mg, sf4
            1. region a:259-415 [129762] picpiclink
          9. 2c3p picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with 1tp, ca, mg, sf4
            1. region b:259-415 [129767] picpiclink
          10. 2uza picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, co2, htl, mg, sf4
            1. region a:259-415 [152327] picpiclink
          11. 2uza picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, co2, htl, mg, sf4
            1. region b:259-415 [152332] picpiclink
          12. 2c3u picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with 2tp, ca, mg, pyr, sf4
            1. region a:259-415 [129772] picpiclink
          13. 2c3u picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with 2tp, ca, mg, pyr, sf4
            1. region b:259-415 [129777] picpiclink
          14. 1b0p picpicxrefxrefxrefxref
            complexed with ca, fs4, mg, tpp
            1. region a:259-415 [33104] picpiclink
            2. region b:259-415 [33105] picpiclink
          15. 2c3o picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, mg, pyr, sf4, tpp
            1. region a:259-415 [129752] picpiclink
          16. 2c3o picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1b0pa3
            complexed with ca, mg, pyr, sf4, tpp
            1. region b:259-415 [129757] picpiclink
          17. 2pda picpicxrefxrefxrefxref
            complexed with ca, fs4, mg, pyr, tpp
            1. region a:259-415 [33106] picpiclink
            2. region b:259-415 [33107] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk