Structural Classification of Proteins
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Fold: Pyruvate kinase C-terminal domain-like

3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Pyruvate kinase C-terminal domain-like [52934]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest

Superfamilies:

  1. PK C-terminal domain-like [52935] (2)
    link to SUPERFAMILY database - Superfamily
    1. Pyruvate kinase, C-terminal domain [52936] (6)
      1. Pyruvate kinase, C-terminal domain [52937]
        1. Cat (Felis catus) [TaxId: 9685] [52938] (1)
          1. 1pkm picpicxrefxref
            1. region a:396-530 [33108] picpiclink
        2. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [52939] (14)
          1. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region a:396-530 [134620] picpiclink
          2. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region b:396-530 [134623] picpiclink
          3. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region c:396-530 [134626] picpiclink
          4. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region d:396-530 [134629] picpiclink
          5. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region e:396-530 [134632] picpiclink
          6. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region f:396-530 [134635] picpiclink
          7. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region g:396-530 [134638] picpiclink
          8. 2g50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1a49a3
            complexed with ala, edo, ete, gol, k, mn, na, pyr
            1. region h:396-530 [134641] picpiclink
          9. 1a49 picpicxrefxref
            complexed with atp, k, mg, oxl
            1. region a:396-530 [33109] picpiclink
            2. region b:996-1130 [33110] picpiclink
            3. region c:1596-1730 [33111] picpiclink
            4. region d:2196-2330 [33112] picpiclink
            5. region e:3396-3530 [33113] picpiclink
            6. region f:3996-4130 [33114] picpiclink
            7. region g:4596-4730 [33115] picpiclink
            8. region h:5196-5330 [33116] picpiclink
          10. 1a5u picpicxrefxref
            complexed with atp, mg, na, oxl
            1. region a:396-530 [33117] picpiclink
            2. region b:996-1130 [33118] picpiclink
            3. region c:1596-1730 [33119] picpiclink
            4. region d:2196-2330 [33120] picpiclink
            5. region e:3396-3530 [33121] picpiclink
            6. region f:3996-4130 [33122] picpiclink
            7. region g:4596-4730 [33123] picpiclink
            8. region h:5196-5330 [33124] picpiclink
          11. 1f3x picpicxrefxref
            complexed with k, mn, pyr; mutant
            1. region a:396-530 [64960] picpiclink
            2. region b:396-530 [64963] picpiclink
            3. region c:396-530 [64966] picpiclink
            4. region d:396-530 [64969] picpiclink
            5. region e:396-530 [64972] picpiclink
            6. region f:396-530 [64975] picpiclink
            7. region g:396-530 [64978] picpiclink
            8. region h:396-530 [64981] picpiclink
          12. 1f3w picpicxrefxref
            complexed with k, mn, pyr
            1. region a:396-530 [64936] picpiclink
            2. region b:396-530 [64939] picpiclink
            3. region c:396-530 [64942] picpiclink
            4. region d:396-530 [64945] picpiclink
            5. region e:396-530 [64948] picpiclink
            6. region f:396-530 [64951] picpiclink
            7. region g:396-530 [64954] picpiclink
            8. region h:396-530 [64957] picpiclink
          13. 1aqf picpicxrefxref
            complexed with k, mg, pep
            1. region a:396-530 [33126] picpiclink
            2. region b:396-530 [33127] picpiclink
            3. region c:396-530 [33128] picpiclink
            4. region d:396-530 [33129] picpiclink
            5. region e:396-530 [33130] picpiclink
            6. region f:396-530 [33131] picpiclink
            7. region g:396-530 [33132] picpiclink
            8. region h:396-530 [33133] picpiclink
          14. 1pkn picpicxrefxref
            complexed with k p, mn, pyr
            1. region a:396-530 [33125] picpiclink
        3. Human (Homo sapiens) [TaxId: 9606] [82431] (4)
          1. 1liu picpicxrefxref
            complexed with fbp, k, mn, pga
            1. region a:440-573 [77972] picpiclink
            2. region b:440-573 [77975] picpiclink
            3. region c:440-573 [77978] picpiclink
            4. region d:440-573 [77981] picpiclink
          2. 1liw picpicxrefxref
            complexed with fbp, k, mn, pga; mutant
            1. region a:440-573 [77984] picpiclink
            2. region b:440-573 [77987] picpiclink
            3. region c:440-573 [77990] picpiclink
            4. region d:440-573 [77993] picpiclink
          3. 1liy picpicxrefxref
            complexed with fbp, k, mn, pga; mutant
            1. region a:440-573 [78008] picpiclink
            2. region b:440-573 [78011] picpiclink
            3. region c:440-573 [78014] picpiclink
            4. region d:440-573 [78017] picpiclink
          4. 1lix picpicxrefxref
            complexed with fbp, k, mn, pga; mutant
            1. region a:440-573 [77996] picpiclink
            2. region b:440-573 [77999] picpiclink
            3. region c:440-573 [78002] picpiclink
            4. region d:440-573 [78005] picpiclink
        4. Leishmania mexicana [TaxId: 5665] [52940] (8)
          1. 1pkl picpicxrefxref
            complexed with so4
            1. region a:358-498 [33134] picpiclink
            2. region b:358-498 [33135] picpiclink
            3. region c:358-498 [33136] picpiclink
            4. region d:358-498 [33137] picpiclink
            5. region e:358-498 [33138] picpiclink
            6. region f:358-498 [33139] picpiclink
            7. region g:358-498 [33140] picpiclink
            8. region h:358-498 [33141] picpiclink
          2. 3e0w picpicxrefxref
            automatically matched to d1pkla3
            mutant
            1. region a:358-498 [157968] picpiclink
          3. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region a:358-498 [157950] picpiclink
          4. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region b:358-498 [157953] picpiclink
          5. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region c:358-498 [157956] picpiclink
          6. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region d:358-498 [157959] picpiclink
          7. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region e:358-498 [157962] picpiclink
          8. 3e0v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1pkla3
            complexed with gol, so4; mutant
            1. region f:358-498 [157965] picpiclink
        5. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [52941] (2)
          1. 1a3x picpicxrefxref
            complexed with k, mn, pga
            1. region a:367-500 [33144] picpiclink
            2. region b:367-500 [33145] picpiclink
          2. 1a3w picpicxrefxref
            complexed with fbp, k, mn, pga
            1. region a:367-500 [33142] picpiclink
            2. region b:367-500 [33143] picpiclink
        6. Escherichia coli [TaxId: 562] [52942] (3)
          1. 1e0t picpicxrefxref
            complexed with so4; mutant
            1. region a:354-470 [33146] picpiclink
            2. region b:354-470 [33147] picpiclink
            3. region c:354-470 [33148] picpiclink
            4. region d:354-470 [33149] picpiclink
          2. 1pky picpicxrefxref
            1. region a:351-470 [33150] picpiclink
            2. region b:351-470 [33151] picpiclink
            3. region c:351-470 [33152] picpiclink
            4. region d:351-470 [33153] picpiclink
          3. 1e0u picpicxrefxref
            complexed with so4; mutant
            1. region a:354-470 [33154] picpiclink
            2. region b:354-470 [33155] picpiclink
            3. region c:354-470 [33156] picpiclink
            4. region d:354-470 [33157] picpiclink
    2. MTH1675-like [110616] (2)
      PfamB 019040; probable flavoenzyme, binds FMN; the phosphoribityl group binds in the equivalent site to the binding site of the PK allosteric regulator FBP
      1. Hypothetical protein MTH1675 [110617]
        1. Methanobacterium thermoautotrophicum [TaxId: 145262] [110618] (1)
          SQ O27711
          1. 1t57 picpic
            Structural genomics target
            complexed with fmn, mg
            1. chain a [106430] picpiclink
            2. chain b [106431] picpiclink
            3. chain c [106432] picpiclink
      2. Hypothetical protein AF0103 [117613]
        1. Archaeoglobus fulgidus [TaxId: 2234] [117614] (1)
          SQ O30133
          1. 1vp8 picpic
            Structural genomics target
            complexed with fmn, unl
            1. chain a [113947] picpiclink
  2. ATP synthase (F1-ATPase), gamma subunit [52943] (1)
    contains an antiparallel coiled coil formed by N- and C-terminal extensions to the common fold
    link to SUPERFAMILY database - Superfamily
    1. ATP synthase (F1-ATPase), gamma subunit [52944] (3)
      1. ATP synthase (F1-ATPase), gamma subunit [52945]
        1. Cow (Bos taurus) [TaxId: 9913] [52946] (14)
          SQ P05631
          1. 2jdi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfg_
            complexed with anp, mg
            1. region g:1-272 [138272] picpiclink
          2. 2ck3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bmfg_
            complexed with adp, anp, azi, mg, po4
            1. region g:1-270 [130562] picpiclink
          3. 1w0j picpicxrefxrefxrefxrefxrefxref
            complexed with adp, bef, gol, mo3, mo4, po4
            1. chain g [109007] picpiclink
          4. 1e79 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with adp, atp, cry, glh, mg, so4
            1. chain g [33158] picpiclink
          5. 1w0k picpicxrefxrefxrefxrefxrefxref
            complexed with adp, gol, mg, po4
            1. chain g [109026] picpiclink
          6. 1h8e picpicxrefxrefxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, alf, gol, mg, so4
            1. chain g [60756] picpiclink
          7. 1nbm picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, atp, mg, po4, tyn
            1. chain g [33161] picpiclink
          8. 1e1r picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, af3, anp, mg, po4
            1. chain g [33159] picpiclink
          9. 1bmf picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, anp, mg
            1. chain g [33160] picpiclink
          10. 1e1q picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, anp, mg, po4
            1. chain g [33162] picpiclink
          11. 1efr picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, anp, app, bal, cpi, mg, tlx
            1. chain g [33163] picpiclink
          12. 1ohh picpicxrefxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with anp, mg
            1. chain g [87033] picpiclink
          13. 1h8h picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, atp, gol, mg, po4
            1. chain g [60777] picpiclink
          14. 1cow picpicxrefxrefxrefxrefxrefxref
            core domain is disordered; only coiled coil part is visible
            complexed with adp, anp, aur, mg
            1. chain g [33164] picpiclink
        2. Rat (Rattus norvegicus) [TaxId: 10116] [52947] (2)
          1. 1mab picpicxrefxrefxrefxrefxrefxref
            partly disordered
            complexed with adp, atp, mg, po4
            1. chain g [33165] picpiclink
          2. 2f43 picpicxrefxrefxrefxrefxrefxref
            partly disordered in the crystal
            complexed with adp, atp, mg, vo4
            1. region g:4-273 [145134] picpiclink
        3. Escherichia coli [TaxId: 562] [64070] (1)
          1. 1fs0 picpicxrefxref
            complexed to the epsilon subunit; the coiled-coil part is disordered
            1. chain g [59999] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk