Structural Classification of Proteins

Fold: Anticodon-binding domain-like

: 3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Anticodon-binding domain-like [52953]
3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest

Superfamilies:

Class II aaRS ABD-related [52954] (2)
uperfamily
1. Anticodon-binding domain of Class II aaRS [52955] (13)
  1. Histidyl-tRNA synthetase (HisRS), C-terminal domain [52956]
    1. Escherichia coli [TaxId: 562] [52957] (7)
    2. Staphylococcus aureus [TaxId: 1280] [52958] (1)
    3. Thermus thermophilus [TaxId: 274] [52959] (3)
    4. Archaeon Thermoplasma acidophilum [TaxId: 2303] [142418] (2)
      SQ Q9HLX5 330-426
  2. Glycyl-tRNA synthetase (GlyRS), C-terminal domain [52960]
    1. Thermus thermophilus [TaxId: 274] [52961] (3)
  3. Threonyl-tRNA synthetase (ThrRS), C-terminal domain [52962]
    1. Escherichia coli [TaxId: 562] [52963] (5)
    2. Staphylococcus aureus [TaxId: 1280] [102469] (2)
  4. Prolyl-tRNA synthetase (ProRS) domain [64071]
    1. Thermus thermophilus [TaxId: 274] [64072] (4)
    2. Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262] [89714] (4)
    3. Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190] [89715] (1)
  5. The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain [64073]
    1. Mouse (Mus musculus) [TaxId: 10090] [64074] (2)
    2. Human (Homo sapiens) [TaxId: 9606] [142419] (4)
      SQ Q9UHN1 369-485
  6. Nuclear receptor coactivator 5 (KIAA1637) [110619]
    1. Human (Homo sapiens) [TaxId: 9606] [110620] (1)
      SQ Q9HCD5 197-313
2. Brix domain [142420] (2)
  Pfam 04427; tandem repeat of two ABD-like structural repeats, which are associated together with the formation of single beta-sheet, folded into half-barrel
  1. Probable ribosomal biogenesis protein [142421]
    comprises stand-alone brix domain
    1. Methanobacterium thermoautotrophicum [TaxId: 145262] [142422] (2)
      SQ O26776 1-154
      MTH680
    2. Archaeon Aeropyrum pernix [TaxId: 56636] [142423] (1)
      SQ Q9YC08 13-192
      APE1443
TolB, N-terminal domain [52964] (1)
uperfamily
1. TolB, N-terminal domain [52965] (1)
  1. TolB, N-terminal domain [52966]
    1. Escherichia coli [TaxId: 562] [52967] (10)
B12-dependent dehydatase associated subunit [52968] (2)
uperfamily
1. Diol dehydratase, beta subunit [52969] (2)
  contains additional structures in the C-terminal extension
  1. Diol dehydratase, beta subunit [52970]
    1. Klebsiella oxytoca [TaxId: 571] [52971] (7)
    2. Klebsiella pneumoniae [TaxId: 573] [82432] (2)
2. Dehydratase-reactivating factor beta subunit [82433] (2)
  1. Glycerol dehydratase reactivase, beta subunit [82434]
    1. Klebsiella pneumoniae [TaxId: 573] [82435] (1)
  2. Diol dehydratase-reactivating factor small subunit DdrB [142424]
    1. Klebsiella oxytoca [TaxId: 571] [142425] (4)
      SQ O68196 5-112
ITPase-like [52972] (3)
formerly Maf/Ham1; elaborated with additional structures inserted in the common fold
uperfamily
1. ITPase (Ham1) [52973] (5)
  Pfam 01725
  1. XTP pyrophosphatase [52974]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [52975] (2)
      MJ0226
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102470] (6)
      PH1917
  2. Hypothetical protein YggV [75242]
    annotated as putative ribosomal protein
    1. Escherichia coli [TaxId: 562] [75243] (1)
  3. Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 [117615]
    1. Thermotoga maritima [TaxId: 2336] [117616] (1)
      SQ Q9WY06
  4. Inosine triphosphate pyrophosphatase, ITPase [142426]
    1. Human (Homo sapiens) [TaxId: 9606] [142427] (11)
      SQ Q9BY32 1-194
2. Maf-like [52976] (2)
  1. Maf protein [52977]
    1. Bacillus subtilis [TaxId: 1423] [52978] (2)
  2. Maf homologue Tb11.01.5890 [142428]
    1. Trypanosoma brucei [TaxId: 5691] [142429] (1)
      SQ Q382A9 3-203
3. YjjX-like [110621] (3)
  Pfam 01931
  1. Hypothetical protein YjjX [110622]
    1. Salmonella typhimurium [TaxId: 90371] [110623] (1)
      SQ P39432
    2. Escherichia coli [TaxId: 562] [142430] (8)
      SQ P39411 1-170
  2. Hypothetical protein VC0702 [142431]
    1. Vibrio cholerae [TaxId: 666] [142432] (6)
      SQ Q9KU27 9-181
CinA-like [142433] (1)
uperfamily
1. CinA-like [142434] (1)
  Pfam 02464
  1. Competence/damage-inducible protein CinA [142435]
    1. Agrobacterium tumefaciens [TaxId: 358] [142436] (2)
      SQ Q8UFF5 1-167
XCC0632-like [159594] (2)
short crossover loop between strands 2 and 3; the antiparallel part of the beta-sheet (strands 3, 4 and 5) and the C-terminal helix are quite long
1. NLBH-like [159595] (1)
  Pfam 05211; Neuraminyllactose-binding hemagglutinin
  1. Hypothetical protein HP0492 [159596]
    1. Helicobacter pylori [TaxId: 210] [159597] (1)
      SQ O25234 51-271
2. XCC0632-like [159598] (1)
  Pfam 03886; DUF330
  1. Hypothetical protein XCC0632 [159599]
    1. Xanthomonas campestris pv. campestris [TaxId: 340] [159600] (8)
      SQ Q8PCT0 32-209