Structural Classification of Proteins
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Superfamily: Class II aaRS ABD-related

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Anticodon-binding domain-like [52953]
    3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
  4. Superfamily: Class II aaRS ABD-related [52954]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Anticodon-binding domain of Class II aaRS [52955] (13)
    1. Histidyl-tRNA synthetase (HisRS), C-terminal domain [52956]
      1. Escherichia coli [TaxId: 562] [52957] (7)
        1. 1kmm picpicxref
          complexed with ham
          1. region a:326-424 [33174] picpiclink
          2. region b:326-424 [33175] picpiclink
          3. region c:326-424 [33176] picpiclink
          4. region d:326-424 [33177] picpiclink
        2. 2el9 picpicxrefxrefxrefxref
          automatically matched to d1htta1
          complexed with hss
          1. region a:326-424 [146887] picpiclink
        3. 2el9 picpicxrefxrefxrefxref
          automatically matched to d1htta1
          complexed with hss
          1. region b:326-424 [146889] picpiclink
        4. 2el9 picpicxrefxrefxrefxref
          automatically matched to d1htta1
          complexed with hss
          1. region c:326-424 [146891] picpiclink
        5. 2el9 picpicxrefxrefxrefxref
          automatically matched to d1htta1
          complexed with hss
          1. region d:326-424 [146893] picpiclink
        6. 1htt picpicxref
          complexed with amp
          1. region a:326-424 [33178] picpiclink
          2. region b:326-424 [33179] picpiclink
          3. region c:326-424 [33180] picpiclink
          4. region d:326-424 [33181] picpiclink
        7. 1kmn picpicxref
          complexed with atp, hso
          1. region a:326-424 [33182] picpiclink
          2. region b:326-424 [33183] picpiclink
          3. region c:326-424 [33184] picpiclink
          4. region d:326-424 [33185] picpiclink
      2. Staphylococcus aureus [TaxId: 1280] [52958] (1)
        1. 1qe0 picpicxref
          1. region a:326-420 [33186] picpiclink
          2. region b:326-419 [33187] picpiclink
      3. Thermus thermophilus [TaxId: 274] [52959] (3)
        1. 1h4v picpicxref
          complexed with so4
          1. region b:326-421 [60624] picpiclink
        2. 1adj picpicxref
          complexed with so4
          1. region a:326-421 [33188] picpiclink
          2. region b:326-421 [33189] picpiclink
          3. region c:326-421 [33190] picpiclink
          4. region d:326-421 [33191] picpiclink
        3. 1ady picpicxref
          complexed with ham, so4
          1. region a:326-421 [33192] picpiclink
          2. region b:326-421 [33193] picpiclink
          3. region c:326-421 [33194] picpiclink
          4. region d:326-421 [33195] picpiclink
      4. Archaeon Thermoplasma acidophilum [TaxId: 2303] [142418] (2)
        SQ Q9HLX5 330-426
        1. 1wu7 picpicxrefxref
          1. region a:330-426 [121275] picpiclink
        2. 1wu7 picpicxrefxref
          automatically matched to 1WU7 A:330-426
          1. region b:330-424 [121277] picpiclink
    2. Glycyl-tRNA synthetase (GlyRS), C-terminal domain [52960]
      1. Thermus thermophilus [TaxId: 274] [52961] (3)
        1. 1ati picpicxref
          1. region a:395-505 [33196] picpiclink
          2. region b:395-505 [33197] picpiclink
        2. 1b76 picpicxref
          complexed with atp
          1. region a:395-505 [33198] picpiclink
          2. region b:395-505 [33199] picpiclink
        3. 1ggm picpicxref
          complexed with gap
          1. region a:395-505 [33200] picpiclink
          2. region b:395-505 [33201] picpiclink
    3. Threonyl-tRNA synthetase (ThrRS), C-terminal domain [52962]
      1. Escherichia coli [TaxId: 562] [52963] (5)
        1. 1qf6 picpicxrefxrefxref
          complexed with aet, amp, dhu, g7m, psu, zn
          1. region a:533-642 [33210] picpiclink
        2. 1evl picpicxref
          a truncated form of the enzyme
          complexed with tsb, zn
          1. region a:533-642 [33202] picpiclink
          2. region b:533-642 [33203] picpiclink
          3. region c:533-642 [33204] picpiclink
          4. region d:533-642 [33205] picpiclink
        3. 1fyf picpicxref
          a truncated form of the enzyme
          complexed with ssa, zn
          1. region a:533-642 [33206] picpiclink
          2. region b:533-642 [33207] picpiclink
        4. 1evk picpicxref
          a truncated form of the enzyme
          complexed with thr, zn
          1. region a:533-642 [33208] picpiclink
          2. region b:533-642 [33209] picpiclink
        5. 1kog picpicxref
          a truncated form of the enzyme
          complexed with tsb, zn; mutant
          1. region a:533-642 [72805] picpiclink
          2. region b:533-642 [72807] picpiclink
          3. region c:533-642 [72809] picpiclink
          4. region d:533-642 [72811] picpiclink
          5. region e:533-642 [72813] picpiclink
          6. region f:533-642 [72815] picpiclink
          7. region g:533-642 [72817] picpiclink
          8. region h:533-642 [72819] picpiclink
      2. Staphylococcus aureus [TaxId: 1280] [102469] (2)
        1. 1nyr picpicxrefxrefxref
          complexed with atp, thr, zn
          1. region a:533-645 [92354] picpiclink
          2. region b:533-645 [92358] picpiclink
        2. 1nyq picpicxrefxrefxref
          complexed with tsb, zn
          1. region a:533-645 [92346] picpiclink
          2. region b:533-645 [92350] picpiclink
    4. Prolyl-tRNA synthetase (ProRS) domain [64071]
      1. Thermus thermophilus [TaxId: 274] [64072] (4)
        1. 1hc7 picpicxrefxref
          complexed with zn
          1. region a:277-403 [60938] picpiclink
          2. region b:277-403 [60941] picpiclink
          3. region c:277-403 [60944] picpiclink
          4. region d:277-403 [60947] picpiclink
        2. 1h4t picpicxrefxref
          complexed with pro, zn
          1. region a:277-403 [60610] picpiclink
          2. region b:277-403 [60613] picpiclink
          3. region c:277-403 [60616] picpiclink
          4. region d:277-403 [60619] picpiclink
        3. 1h4s picpicxrefxref
          complexed with 5mu, psd, psu, so4, zn
          1. region a:277-403 [60604] picpiclink
          2. region b:277-403 [60607] picpiclink
        4. 1h4q picpicxrefxref
          complexed with 5mu, atp, pri, psu, so4, zn
          1. region a:277-403 [60598] picpiclink
          2. region b:277-403 [60601] picpiclink
      2. Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262] [89714] (4)
        1. 1nj1 picpicxrefxref
          complexed with 5ca, mg, zn
          1. region a:284-410 [85755] picpiclink
        2. 1nj5 picpicxrefxref
          complexed with mg, p5a, zn
          1. region a:284-410 [85762] picpiclink
        3. 1nj6 picpicxrefxref
          complexed with a5a, mg, zn
          1. region a:284-410 [85765] picpiclink
        4. 1nj2 picpicxrefxref
          complexed with mg, zn
          1. region a:284-410 [85758] picpiclink
      3. Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190] [89715] (1)
        1. 1nj8 picpicxrefxref
          1. region a:268-393 [85769] picpiclink
          2. region b:268-393 [85772] picpiclink
          3. region c:268-393 [85775] picpiclink
          4. region d:268-393 [85778] picpiclink
    5. The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain [64073]
      1. Mouse (Mus musculus) [TaxId: 10090] [64074] (2)
        1. 1g5h picpicxref
          complexed with gol, na
          1. region a:343-469 [60270] picpiclink
          2. region b:343-460 [60272] picpiclink
          3. region c:343-469 [60274] picpiclink
          4. region d:338-468 [60276] picpiclink
        2. 1g5i picpicxref
          complexed with gol, na
          1. region a:343-469 [60278] picpiclink
          2. region b:343-460 [60280] picpiclink
          3. region c:343-469 [60282] picpiclink
          4. region d:338-468 [60284] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [142419] (4)
        SQ Q9UHN1 369-485
        1. 2g4c picpicxrefxrefxrefxref
          1. region a:369-485 [134582] picpiclink
        2. 2g4c picpicxrefxrefxrefxref
          automatically matched to 2G4C A:369-485
          1. region b:369-485 [134584] picpiclink
        3. 2g4c picpicxrefxrefxrefxref
          automatically matched to 2G4C A:369-485
          1. region c:369-485 [134586] picpiclink
        4. 2g4c picpicxrefxrefxrefxref
          automatically matched to 2G4C A:369-485
          1. region d:369-485 [134588] picpiclink
    6. Nuclear receptor coactivator 5 (KIAA1637) [110619]
      1. Human (Homo sapiens) [TaxId: 9606] [110620] (1)
        SQ Q9HCD5 197-313
        1. 1v95 picpic
          Structural genomics target
          1. chain a [108435] picpiclink
  2. Brix domain [142420] (2)
    Pfam 04427; tandem repeat of two ABD-like structural repeats, which are associated together with the formation of single beta-sheet, folded into half-barrel
    1. Probable ribosomal biogenesis protein [142421]
      comprises stand-alone brix domain
      1. Methanobacterium thermoautotrophicum [TaxId: 145262] [142422] (2)
        SQ O26776 1-154
        MTH680
        1. 1w94 picpic
          1. region a:1-154 [120774] picpiclink
        2. 1w94 picpic
          automatically matched to 1W94 A:1-154
          1. region b:1-154 [120775] picpiclink
      2. Archaeon Aeropyrum pernix [TaxId: 56636] [142423] (1)
        SQ Q9YC08 13-192
        APE1443
        1. 2cxh picpic
          1. region a:13-192 [131005] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk