Structural Classification of Proteins
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Superfamily: Class II aaRS ABD-related

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Anticodon-binding domain-like [52953]
    3 layers: a/b/a; mixed beta-sheet of five strands, order 21345; strand 4 is antiparallel to the rest
  4. Superfamily: Class II aaRS ABD-related [52954]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Anticodon-binding domain of Class II aaRS [52955] (13)
    1. Histidyl-tRNA synthetase (HisRS), C-terminal domain [52956]
      1. Escherichia coli [TaxId: 562] [52957] (7) picpic
      2. Staphylococcus aureus [TaxId: 1280] [52958] (1) picpic
      3. Thermus thermophilus [TaxId: 274] [52959] (3) picpic
      4. Archaeon Thermoplasma acidophilum [TaxId: 2303] [142418] (2) picpic
        SQ Q9HLX5 330-426
    2. Glycyl-tRNA synthetase (GlyRS), C-terminal domain [52960]
      1. Thermus thermophilus [TaxId: 274] [52961] (3) picpic
    3. Threonyl-tRNA synthetase (ThrRS), C-terminal domain [52962]
      1. Escherichia coli [TaxId: 562] [52963] (5) picpic
      2. Staphylococcus aureus [TaxId: 1280] [102469] (2) picpic
    4. Prolyl-tRNA synthetase (ProRS) domain [64071]
      1. Thermus thermophilus [TaxId: 274] [64072] (4) picpic
      2. Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262] [89714] (4) picpic
      3. Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190] [89715] (1) picpic
    5. The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain [64073]
      1. Mouse (Mus musculus) [TaxId: 10090] [64074] (2) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [142419] (4) picpic
        SQ Q9UHN1 369-485
    6. Nuclear receptor coactivator 5 (KIAA1637) [110619]
      1. Human (Homo sapiens) [TaxId: 9606] [110620] (1) picpic
        SQ Q9HCD5 197-313
  2. Brix domain [142420] (2)
    Pfam 04427; tandem repeat of two ABD-like structural repeats, which are associated together with the formation of single beta-sheet, folded into half-barrel
    1. Probable ribosomal biogenesis protein [142421]
      comprises stand-alone brix domain
      1. Methanobacterium thermoautotrophicum [TaxId: 145262] [142422] (2) picpic
        SQ O26776 1-154
        MTH680
      2. Archaeon Aeropyrum pernix [TaxId: 56636] [142423] (1) picpic
        SQ Q9YC08 13-192
        APE1443
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk