Structural Classification of Proteins
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Superfamily: Actin-like ATPase domain

duplication contains two domains of this fold
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Actin-like ATPase domain [53067]
    duplication contains two domains of this fold
    link to SUPERFAMILY database - Superfamily

Families:

  1. Actin/HSP70 [53068] (14)
    1. Heat shock protein 70kDa, ATPase fragment [53069]
      1. Cow (Bos taurus) [TaxId: 9913] [53070] (51) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [53071] (14) picpic
      3. Escherichia coli, gene dnaK [TaxId: 562] [53072] (1) picpic
    2. Actin [53073]
      1. Cow (Bos taurus) [TaxId: 9913] [53074] (68) picpic
      2. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [53075] (20) picpic
        SQ P02568 ! SQ 02568
      3. Chicken (Gallus gallus) [TaxId: 9031] [82437] (1) picpic
        sequence identical to the rabbit actin
      4. Nematode (Caenorhabditis elegans) [TaxId: 6239] [64086] (1) picpic
      5. Dictyostelium discoideum [TaxId: 44689] [53076] (6) picpic
      6. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [53077] (2) picpic
    3. Prokaryotic actin homolog MreB [64087]
      1. Thermotoga maritima [TaxId: 2336] [64088] (3) picpic
    4. Actin-related protein 3, Arp3 [69528]
      part of Arp2/3 complex
      1. Cow (Bos taurus) [TaxId: 9913] [69529] (17) picpic
        SQ P61158
    5. Actin-related protein 2, Arp2 [69530]
      part of Arp2/3 complex
      1. Cow (Bos taurus) [TaxId: 9913] [69531] (3) picpic
        SQ P61160 143-350 # 100% sequence identity
    6. Cell division protein FtsA [53078]
      1. Thermotoga maritima [TaxId: 2336] [53079] (2) picpic
    7. Plasmid segregation protein ParM [82438]
      1. Escherichia coli [TaxId: 562] [82439] (14) picpic
  2. BadF/BadG/BcrA/BcrD-like [64089] (5)
    1. Hydroxyglutaryl-CoA dehydratase component A [64090]
      1. Acidaminococcus fermentans [TaxId: 905] [64091] (1) picpic
    2. Hypothetical protein PG1100 [142452]
      1. Porphyromonas gingivalis [TaxId: 837] [142453] (2) picpic
        SQ Q7MVG4 1-107! SQ Q7MVG4 108-283
    3. Probable N-acetylglucosamine kinase CV2896 [142454]
      1. Chromobacterium violaceum [TaxId: 536] [142455] (4) picpic
        SQ Q7NU07 122-292! SQ Q7NU07 8-121
    4. Hypothetical protein BT3618 [142456]
      1. Bacteroides thetaiotaomicron [TaxId: 818] [142457] (12) picpic
        SQ Q8A1P1 107-280! SQ Q8A1P1 3-106
    5. N-acetylglucosamine kinase, NAGK [142458]
      1. Human (Homo sapiens) [TaxId: 9606] [142459] (16) picpic
        SQ Q9UJ70 1-117! SQ Q9UJ70 118-344
  3. Acetokinase-like [53080] (3)
    1. Acetate kinase [53081]
      1. Archaeon Methanosarcina thermophila [TaxId: 2210] [53082] (6) picpic
        SQ P38502 1-399
    2. butyrate kinase 2 [142460]
      1. Thermotoga maritima [TaxId: 2336] [142461] (18) picpic
        SQ Q9X278 1-172! SQ Q9X278 173-375
    3. Propionate kinase [142462]
      1. Salmonella typhimurium [TaxId: 90371] [142463] (10) picpic
        SQ O06961 193-397! SQ O06961 4-192
  4. ATPase domain of dehydratase reactivase alpha subunit [82440] (2)
    1. ATPase domain of the glycerol dehydratase reactivase alpha subunit [82441]
      includes the insert and linker domains
      1. Klebsiella pneumoniae [TaxId: 573] [82442] (1) picpic
    2. Diol dehydratase-reactivating factor large subunit DdrA [142464]
      1. Klebsiella oxytoca [TaxId: 571] [142465] (8) picpic
        SQ O68195 1-92,255-403! SQ O68195 404-606
  5. Hexokinase [53083] (5)
    1. Hexokinase [53084]
      1. Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932] [64092] (1) picpic
      2. Blood fluke (Schistosoma mansoni) [TaxId: 6183] [53085] (1) picpic
    2. Glucokinase [102479]
      Hexokinase D
      1. Human (Homo sapiens) [TaxId: 9606] [102480] (2) picpic
    3. Mammalian type I hexokinase [53086]
      further duplication: consists of two very similar lobes
      1. Human (Homo sapiens) [TaxId: 9606] [53087] (5) picpic
      2. Rat (Rattus norvegicus) [TaxId: 10116] [53088] (1) picpic
  6. Glycerol kinase [53089] (2)
    1. Glycerol kinase [53090]
      1. Escherichia coli [TaxId: 562] [53091] (28) picpic
      2. Enterococcus casseliflavus [TaxId: 37734] [117641] (2) picpic
        SQ O34153 5-491
  7. Glucokinase [110627] (1)
    Pfam 02685
    1. Glucokinase Glk [110628]
      1. Escherichia coli [TaxId: 562] [110629] (2) picpic
        SQ P46880 P0A6V8
  8. Ppx/GppA phosphatase [110630] (2)
    Pfam 02541
    1. Exopolyphosphatase Ppx [110631]
      1. Aquifex aeolicus [TaxId: 63363] [110632] (6) picpic
        SQ O67040
      2. Escherichia coli [TaxId: 562] [142466] (12) picpic
        SQ P0AFL6 11-134! SQ P0AFL6 135-311
  9. YeaZ-like [110633] (2)
    Pfam 00814; ubiquitous cytoplasmic protein; annotated as Glycoprotease (Peptidase_M22 family) on the basis of one member's known extracellular activity
    1. Hypothetical protein YeaZ [110634]
      1. Escherichia coli [TaxId: 562] [110635] (1) picpic
        SQ P76256
    2. Hypothetical protein TM0874 [142467]
      1. Thermotoga maritima [TaxId: 2336] [142468] (4) picpic
        SQ Q9WZX7 1-103! SQ Q9WZX7 104-193
  10. ROK [110636] (8)
    Pfam 00480
    1. Inorganic polyphosphate/ATP-glucomannokinase PPGMK [110637]
      1. Arthrobacter sp. KM [TaxId: 184230] [110638] (1) picpic
        SQ Q7WT42 11-263 # Fragment
    2. Putative fructokinase YhdR [117642]
      1. Bacillus subtilis [TaxId: 1423] [117643] (1) picpic
        SQ O05510
    3. N-acetylglucosamine kinase [142469]
      Transcriptional regulator, XylR-related
      1. Thermotoga maritima [TaxId: 2336] [142470] (2) picpic
        SQ Q9X0V1 200-368! SQ Q9X0V1 72-199
        TM1224
    4. N-acetylmannosamine kinase NanK [142471]
      1. Escherichia coli [TaxId: 562] [142472] (4) picpic
        SQ P45425 1-119! SQ P45425 120-289
    5. Mlc protein [142473]
      Making large colonies protein
      1. Escherichia coli [TaxId: 562] [142474] (12) picpic
        SQ P50456 211-406! SQ P50456 82-210
    6. Putative regulator protein YcfX [142475]
      1. Salmonella typhimurium [TaxId: 90371] [142476] (2) picpic
        SQ Q8ZPZ9 1-117! SQ Q8ZPZ9 118-303
    7. Hypothetical protein SP2142 [142477]
      1. Streptococcus pneumoniae [TaxId: 1313] [142478] (2) picpic
        SQ Q97NB0 1-114! SQ Q97NB0 115-289
    8. Transcriptional regulator VC2007 [142479]
      1. Vibrio cholerae [TaxId: 666] [142480] (2) picpic
        SQ Q9KQJ1 209-405! SQ Q9KQJ1 81-208
  11. Cyto-EpsL domain [117644] (1)
    N-terminal part of Pfam 05134
    1. Cytoplasmic domain of general secretion pathway protein L, EpsL [117645]
      1. Vibrio cholerae [TaxId: 666] [117646] (7) picpic
        SQ P45782 6-244
  12. Ta0583-like [142481] (1)
    1. Hypothetical protein Ta0583 [142482]
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [142483] (10) picpic
        SQ Q9HKL4 1-164! SQ Q9HKL4 165-325
  13. CoaX-like [142484] (3)
    Pfam 03309; Bordetella pertussis Bvg accessory factor family, Baf
    1. Type III pantothenate kinase, CoaX [142485]
      1. Thermotoga maritima [TaxId: 2336] [142486] (48) picpic
        SQ Q9WZY5 1-118! SQ Q9WZY5 119-245
      2. Pseudomonas aeruginosa [TaxId: 287] [142487] (8) picpic
        SQ Q9HWC1 1-114! SQ Q9HWC1 115-248
      3. Campylobacter jejuni [TaxId: 197] [142488] (4) picpic
        SQ Q5HW73 1-82! SQ Q5HW73 83-208
  14. Fumble-like [159623] (3)
    Pfam 03630; type II pantothenate kinase-like
    1. Pantothenate kinase 3, PANK3 [159624]
      1. Human (Homo sapiens) [TaxId: 9606] [159625] (8) picpic
        SQ Q9H999 12-152! SQ Q9H999 157-368
    2. Type II pantothenate kinase, CoaW [159626]
      1. Staphylococcus aureus [TaxId: 1280] [159627] (2) picpic
        SQ Q8NVG0 1-267
    3. Pantothenate kinase 1, PANK1 [159628]
      1. Human (Homo sapiens) [TaxId: 9606] [159629] (4) picpic
        SQ Q8TE04 236-381! SQ Q8TE04 382-593
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk