Structural Classification of Proteins

Family: Purine and uridine phosphorylases

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Phosphorylase/hydrolase-like [53162]
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
Superfamily: Purine and uridine phosphorylases [53167]
complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
uperfamily
Family: Purine and uridine phosphorylases [53168]

Protein Domains:

Purine nucleoside phosphorylase, PNP [53169]
1. Human (Homo sapiens) [TaxId: 9606] [53170] (17)
  SQ P00491
  1. 3bgs
    automatically matched to d1ulaa_
    complexed with dih, po4
    1. region a:1-284 [155253]
  2. 1rsz
    automatically matched to d1ula__
    complexed with dih, so4
    1. region a:3-284 [118790]
  3. 1m73
    complexed with so4
    1. chain e [91211]
  4. 1rt9
    automatically matched to d1ula__
    complexed with imh, so4
    1. region a:3-284 [118791]
  5. 1rr6
    automatically matched to d1ula__
    complexed with imh, po4
    1. region a:3-284 [118789]
  6. 1pf7
    complexed with imh, so4
    1. chain e [104142]
  7. 1v2h
    complexed with gun, so4
    1. chain e [100271]
  8. 1v41
    complexed with azg, so4
    1. chain e [113520]
  9. 1yry
    automatically matched to d1ula__
    complexed with msg, so4
    1. region e:3-284 [123947]
  10. 1v45
    complexed with 3dg, so4
    1. chain e [113524]
  11. 1rct
    complexed with nos, so4
    1. chain e [97294]
  12. 1v3q
    complexed with 2di, so4
    1. chain e [100290]
  13. 1pwy
    complexed with ac2, so4
    1. chain e [95266]
  14. 1rfg
    complexed with gmp, so4
    1. chain e [111797]
  15. 2q7o
    automatically matched to d1ulaa_
    complexed with imh, po4
    1. region e:1-284 [150096]
  16. 1ulb
    complexed with gun, so4
    1. chain a [33760]
  17. 1ula
    1. chain a [33761]
2. Cow (Bos taurus) [TaxId: 9913] [53171] (20)
  SQ P55859
  1. 3pnp
    complexed with mg, po4
    1. chain a [33763]
  2. 1b8o
    complexed with imh, mg, po4
    1. chain a [33762]
  3. 2ai2
    automatically matched to d1v48a_
    complexed with 144, mg, p1d, zn
    1. region a:3-282 [126814]
  4. 2ai3
    automatically matched to d1v48a_
    complexed with 144, mg, p2g, zn
    1. region a:3-282 [126815]
  5. 4pnp
    complexed with po4
    1. chain a [33764]
  6. 1lvu
    complexed with 9pp, ca
    1. chain a [91146]
    2. chain b [91147]
    3. chain c [91148]
    4. chain d [91149]
    5. chain e [91150]
    6. chain f [91151]
  7. 1a9r
    complexed with hpa, so4
    1. chain a [33767]
  8. 1a9s
    complexed with nos, so4
    1. chain a [33768]
  9. 2ai1
    automatically matched to d1v48a_
    complexed with 144, mg, p1g, zn
    1. region a:3-282 [126813]
  10. 2qpl
    automatically matched to d1v48a_
    complexed with bty, mg, so4
    1. region a:3-284 [151206]
  11. 1a9t
    complexed with hpa, r1p
    1. chain a [33765]
  12. 1a9q
    complexed with hpa, so4
    1. chain a [33769]
  13. 1b8n
    complexed with img, mg, po4
    1. chain a [33766]
  14. 1a9o
    complexed with po4
    1. chain a [33770]
  15. 1v48
    complexed with ha1, mg, zn
    1. chain a [108349]
  16. 1pbn
    1. chain a [33771]
  17. 1fxu
    complexed with gu7, mg, po4, zn
    1. chain a [33772]
  18. 1lv8
    complexed with 9pp, ca
    1. chain a [91132]
    2. chain b [91133]
    3. chain c [91134]
    4. chain d [91135]
    5. chain e [91136]
    6. chain f [91137]
  19. 1vfn
    complexed with hpa, mg, zn
    1. chain a [33773]
  20. 1a9p
    complexed with 9di, po4
    1. chain a [33774]
3. Escherichia coli [TaxId: 562] [53172] (19)
  1. 1k9s
    complexed with fm1, fm2, po4
    1. chain a [68359]
    2. chain b [68360]
    3. chain c [68361]
    4. chain d [68362]
    5. chain e [68363]
    6. chain f [68364]
  2. 1pk9
    complexed with 2fa, po4
    1. chain a [94823]
    2. chain b [94824]
    3. chain c [94825]
  3. 1pr6
    complexed with po4, xya
    1. chain a [95057]
    2. chain b [95058]
    3. chain c [95059]
  4. 1pw7
    complexed with po4, rab
    1. chain a [95202]
    2. chain b [95203]
    3. chain c [95204]
  5. 1pr2
    complexed with mdr, po4
    1. chain a [95048]
    2. chain b [95049]
    3. chain c [95050]
  6. 1ecp
    1. chain a [33775]
    2. chain b [33776]
    3. chain c [33777]
    4. chain d [33778]
    5. chain e [33779]
    6. chain f [33780]
  7. 1pke
    complexed with 2fd, po4
    1. chain a [94826]
    2. chain b [94827]
    3. chain c [94828]
  8. 1ovg
    complexed with mdr, po4; mutant
    1. chain a [93596]
    2. chain b [93597]
    3. chain c [93598]
  9. 1a69
    complexed with fmb, so4
    1. chain a [33781]
    2. chain b [33782]
    3. chain c [33783]
  10. 1pr0
    complexed with nos, po4
    1. chain a [95042]
    2. chain b [95043]
    3. chain c [95044]
  11. 1pr1
    complexed with fmb, po4
    1. chain a [95045]
    2. chain b [95046]
    3. chain c [95047]
  12. 1pk7
    complexed with adn, po4
    1. chain a [94804]
    2. chain b [94805]
    3. chain c [94806]
  13. 1oty
    complexed with 6mp, po4
    1. chain a [93533]
    2. chain b [93534]
    3. chain c [93535]
  14. 1ou4
    complexed with 6mp, po4
    1. chain a [93540]
    2. chain b [93541]
    3. chain c [93542]
  15. 1oum
    complexed with po4, tal; mutant
    1. chain a [93551]
    2. chain b [93552]
    3. chain c [93553]
  16. 1ov6
    complexed with dbm, po4; mutant
    1. chain a [93583]
    2. chain b [93584]
    3. chain c [93585]
  17. 1pr4
    complexed with mtp, po4
    1. chain a [95051]
    2. chain b [95052]
    3. chain c [95053]
  18. 1pr5
    complexed with po4, tbn
    1. chain a [95054]
    2. chain b [95055]
    3. chain c [95056]
  19. 1otx
    complexed with po4; mutant
    1. chain a [93530]
    2. chain b [93531]
    3. chain c [93532]
4. Vibrio cholerae [TaxId: 666] [102499] (2)
  1. 1vhw
    structural genomics
    complexed with adn
    1. chain a [100706]
    2. chain b [100707]
    3. chain c [100708]
    4. chain d [100709]
    5. chain e [100710]
    6. chain f [100711]
  2. 1vhj
    structural genomics
    1. chain a [100674]
    2. chain b [100675]
    3. chain c [100676]
    4. chain d [100677]
    5. chain e [100678]
    6. chain f [100679]
5. Cellulomonas sp. [TaxId: 40001] [53173] (2)
  1. 1qe5
    1. chain a [33784]
    2. chain b [33785]
    3. chain c [33786]
  2. 1c3x
    1. chain a [33787]
    2. chain b [33788]
    3. chain c [33789]
6. Mycobacterium tuberculosis [TaxId: 1773] [64098] (3)
  1. 1g2o
    complexed with imh, po4
    1. chain a [60228]
    2. chain b [60229]
    3. chain c [60230]
  2. 1n3i
    complexed with dih, po4
    1. chain a [91565]
    2. chain b [91566]
    3. chain c [91567]
  3. 1i80
    complexed with 9hx, imr, po4
    1. chain a [61927]
    2. chain b [61928]
    3. chain c [61929]
7. Thermus thermophilus [TaxId: 274] [89721] (4)
  1. 1odk
    complexed with gol
    1. chain a [86863]
    2. chain b [86864]
    3. chain c [86865]
    4. chain d [86866]
    5. chain e [86867]
    6. chain f [86868]
  2. 1odl
    complexed with cl, gol, so4
    1. chain a [86869]
    2. chain b [86870]
    3. chain c [86871]
    4. chain d [86872]
    5. chain e [86873]
    6. chain f [86874]
  3. 1odi
    complexed with adn, so4
    1. chain a [86851]
    2. chain b [86852]
    3. chain c [86853]
    4. chain d [86854]
    5. chain e [86855]
    6. chain f [86856]
  4. 1odj
    complexed with gmp, so4
    1. chain a [86857]
    2. chain b [86858]
    3. chain c [86859]
    4. chain d [86860]
    5. chain e [86861]
    6. chain f [86862]
8. Thermotoga maritima [TaxId: 2336] [117654] (1)
  SQ Q9X1T2
  1. 1vmk
    Structural genomics target
    complexed with gun, mg
    1. chain a [113680]
    2. chain b [113681]
    3. chain c [113682]
9. Bacillus anthracis [TaxId: 1392] [117655] (3)
  SQ Q81T09
  1. 2ac7
    automatically matched to d1xe3d_
    complexed with adn, so4
    1. region a:2-232 [126543]
  2. 2ac7
    automatically matched to d1xe3d_
    complexed with adn, so4
    1. region b:2-232 [126544]
  3. 1xe3
    complexed with cl
    1. chain a [115207]
    2. chain b [115208]
    3. chain c [115209]
    4. chain d [115210]
    5. chain e [115211]
    6. chain f [115212]
Uridine phosphorylase [53176]
1. Escherichia coli [TaxId: 562] [53177] (40)
  also includes the PDB entry (1rxs) where protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
  1. 1rxy
    complexed with act, gol, k, so4
    1. chain a [98065]
    2. chain b [98066]
  2. 1lx7
    complexed with mse
    1. chain a [74329]
    2. chain b [74330]
  3. 1tgy
    automatically matched to d1k3fa_
    complexed with k, r1p, ura
    1. region a:4-253 [119249]
  4. 1tgy
    automatically matched to d1k3fa_
    complexed with k, r1p, ura
    1. region b:4-253 [119250]
  5. 1t0u
    1. chain a [99064]
    2. chain b [99065]
  6. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region a:4-253 [119445]
  7. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region b:4-253 [119446]
  8. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region c:4-253 [119447]
  9. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region d:4-253 [119448]
  10. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region e:4-253 [119449]
  11. 1u1g
    automatically matched to d1k3fa_
    complexed with bbb, k
    1. region f:4-253 [119450]
  12. 1tgv
    automatically matched to d1k3fa_
    complexed with 5ud, k, so4
    1. region a:4-253 [119247]
  13. 1tgv
    automatically matched to d1k3fa_
    complexed with 5ud, k, so4
    1. region b:4-253 [119248]
  14. 1rxc
    complexed with 5ud, k, po4, r1p, urf
    1. chain a [98015]
    2. chain b [98016]
    3. chain c [98017]
    4. chain d [98018]
    5. chain e [98019]
    6. chain f [98020]
    7. chain g [98021]
    8. chain h [98022]
    9. chain i [98023]
    10. chain j [98024]
    11. chain k [98025]
    12. chain l [98026]
  15. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region a:4-253 [119427]
  16. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region b:4-253 [119428]
  17. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region c:4-253 [119429]
  18. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region d:4-253 [119430]
  19. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region e:4-253 [119431]
  20. 1u1d
    automatically matched to d1k3fa_
    complexed with 181, k, po4
    1. region f:4-253 [119432]
  21. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region a:4-253 [119433]
  22. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region b:4-253 [119434]
  23. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region c:4-253 [119435]
  24. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region d:4-253 [119436]
  25. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region e:4-253 [119437]
  26. 1u1e
    automatically matched to d1k3fa_
    complexed with 182, k, po4
    1. region f:4-253 [119438]
  27. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region a:4-253 [119439]
  28. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region b:4-253 [119440]
  29. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region c:4-253 [119441]
  30. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region d:4-253 [119442]
  31. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region e:4-253 [119443]
  32. 1u1f
    automatically matched to d1k3fa_
    complexed with 183, k, po4
    1. region f:4-253 [119444]
  33. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region a:4-253 [119421]
  34. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region b:4-253 [119422]
  35. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region c:4-253 [119423]
  36. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region d:4-253 [119424]
  37. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region e:4-253 [119425]
  38. 1u1c
    automatically matched to d1k3fa_
    complexed with bau, k, po4
    1. region f:4-253 [119426]
  39. 1rxu
    complexed with k, po4, thm
    1. chain a [98037]
    2. chain b [98038]
    3. chain c [98039]
    4. chain d [98040]
    5. chain e [98041]
    6. chain f [98042]
    7. chain g [98043]
    8. chain h [98044]
    9. chain i [98045]
    10. chain j [98046]
    11. chain k [98047]
    12. chain l [98048]
    13. chain m [98049]
    14. chain n [98050]
    15. chain o [98051]
    16. chain p [98052]
    17. chain q [98053]
    18. chain r [98054]
  40. 1k3f
    1. chain a [68105]
    2. chain b [68106]
    3. chain c [68107]
    4. chain d [68108]
    5. chain e [68109]
    6. chain f [68110]
2. Salmonella typhimurium [TaxId: 90371] [117656] (1)
  SQ P0A1F6
  1. 1ryz
    complexed with acy
    1. chain a [111975]
    2. chain b [111976]
    3. chain c [111977]
    4. chain d [111978]
    5. chain e [111979]
    6. chain f [111980]
Putative uridine phosphorylase [102500]
1. Plasmodium falciparum [TaxId: 5833] [102501] (4)
  1. 1q1g
    complexed with ioh, mti, so4
    1. chain a [95574]
    2. chain b [95575]
    3. chain c [95576]
    4. chain d [95577]
    5. chain e [95578]
    6. chain f [95579]
  2. 1nw4
    complexed with imh, ioh, so4
    1. chain a [92223]
    2. chain b [92224]
    3. chain c [92225]
    4. chain d [92226]
    5. chain e [92227]
    6. chain f [92228]
  3. 1sq6
    complexed with so4
    1. chain a [98964]
  4. 2bsx
    automatically matched to d1nw4a_
    complexed with nos
    1. region a:3-245 [129128]
5'-deoxy-5'-methylthioadenosine phosphorylase [53174]
1. Human (Homo sapiens) [TaxId: 9606] [53175] (5)
  SQ Q13126
  1. 1cb0
    complexed with ade; mutant
    1. chain a [33790]
  2. 1cg6
    complexed with mta, so4; mutant
    1. chain a [33791]
  3. 1k27
    complexed with mtm, po4
    1. chain a [90926]
  4. 1sd1
    complexed with fmc
    1. chain a [105426]
  5. 1sd2
    complexed with mth, so4
    1. chain a [105427]
2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [69536] (9)
  1. 1je0
    complexed with po4, trs
    1. chain a [66581]
    2. chain b [66582]
    3. chain c [66583]
  2. 1jds
    complexed with po4, trs
    1. chain a [66560]
    2. chain b [66561]
    3. chain c [66562]
    4. chain d [66563]
    5. chain e [66564]
    6. chain f [66565]
  3. 1je1
    complexed with gmp, so4
    1. chain a [66584]
    2. chain b [66585]
    3. chain c [66586]
    4. chain d [66587]
    5. chain e [66588]
    6. chain f [66589]
  4. 1jpv
    complexed with so4
    1. chain a [67056]
    2. chain b [67057]
    3. chain c [67058]
  5. 1jp7
    complexed with so4
    1. chain a [67006]
    2. chain b [67007]
    3. chain c [67008]
  6. 1jdv
    complexed with adn, so4
    1. chain a [66572]
    2. chain b [66573]
    3. chain c [66574]
    4. chain d [66575]
    5. chain e [66576]
    6. chain f [66577]
  7. 1jdt
    complexed with mta, so4
    1. chain a [66566]
    2. chain b [66567]
    3. chain c [66568]
  8. 1jdz
    complexed with fmb, so4
    1. chain a [66578]
    2. chain b [66579]
    3. chain c [66580]
  9. 1jdu
    1. chain a [66569]
    2. chain b [66570]
    3. chain c [66571]
3. Sulfolobus tokodaii [TaxId: 111955] [117657] (1)
  SQ Q975C3
  1. 1v4n
    structural genomics target
    1. chain a [113530]
    2. chain b [113531]
    3. chain c [113532]
5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase [82448]
1. Escherichia coli [TaxId: 562] [82449] (8)
  1. 1jys
    complexed with ade
    1. chain a [77216]
    2. chain b [77217]
  2. 1z5p
    automatically matched to d1nc3a_
    complexed with gol, ipa, pe5
    1. region a:1-232 [124487]
  3. 1nc1
    complexed with mth
    1. chain a [91779]
    2. chain b [91780]
  4. 1nc3
    complexed with fmc
    1. chain a [85546]
    2. chain b [85547]
  5. 1y6r
    automatically matched to d1nc3a_
    complexed with mtm
    1. region a:-1-232 [122672]
  6. 1y6r
    automatically matched to d1nc3a_
    complexed with mtm
    1. region b:1-232 [122673]
  7. 1y6q
    automatically matched to d1nc3a_
    complexed with cl, tdi
    1. region a:-1-232 [122670]
  8. 1y6q
    automatically matched to d1nc3a_
    complexed with cl, tdi
    1. region b:1-232 [122671]
AMP nucleosidase [110645]
contains extra N-terminal oligomerisation (sub)domain (8-153)
1. Escherichia coli [TaxId: 562] [110646] (4)
  SQ P15272
  1. 1t8s
    complexed with fmp
    1. chain a [106679]
    2. chain b [106680]
    3. chain c [106681]
    4. chain d [106682]
    5. chain e [106683]
    6. chain f [106684]
  2. 1t8r
    1. chain a [106673]
    2. chain b [106674]
    3. chain c [106675]
    4. chain d [106676]
    5. chain e [106677]
    6. chain f [106678]
  3. 1t8w
    1. chain a [106689]
    2. chain b [106690]
    3. chain c [106691]
    4. chain d [106692]
    5. chain e [106693]
    6. chain f [106694]
  4. 1t8y
    complexed with po4
    1. chain a [106695]
    2. chain b [106696]
    3. chain c [106697]
    4. chain d [106698]
    5. chain e [106699]
    6. chain f [106700]
2. Bacteroides thetaiotaomicron [TaxId: 818] [117658] (1)
  SQ Q7MVU1
  1. 1ybf
    Structural genomics target
    1. chain a [116609]
    2. chain b [116610]
    3. chain c [116611]