Structural Classification of Proteins

Superfamily: LeuD/IlvD-like

: contains mixed beta-sheet barrel, closed n=7, S=10
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: The "swivelling" beta/beta/alpha domain [52008]
3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
this domain is thought to be mobile in most multi-domain proteins known to contain it
Superfamily: LeuD/IlvD-like [52016]
contains mixed beta-sheet barrel, closed n=7, S=10
uperfamily

Families:

LeuD-like [52017] (5)
Pfam 00694; permutation of the domain order in the proteins containing this family domain
1. Aconitase A, C-terminal domain [52018]
  other three domains have alpha/beta folds
  1. Pig (Sus scrofa) [TaxId: 9823] [52019] (6)
    1. 7acn
      complexed with fs4, ict
      1. region a:529-754 [30717]
    2. 5acn
      complexed with fs3, so4, trc
      1. region a:529-754 [30718]
    3. 1b0j
      complexed with fs4, iso; mutant
      1. region a:529-754 [30719]
    4. 1b0k
      complexed with flc, fs4; mutant
      1. region a:529-754 [30720]
    5. 6acn
      complexed with fs4, so4, trc
      1. region a:529-754 [30721]
    6. 1b0m
      complexed with flc, fs4; mutant
      1. region a:529-754 [30722]
  2. Cow (Bos taurus) [TaxId: 9913] [52020] (9)
    1. 1aco
      complexed with fs4, tra
      1. region a:529-754 [30723]
    2. 8acn
      complexed with fs4, nic
      1. region a:529-754 [30724]
    3. 1amj
      complexed with fs4, oh, so4
      1. region a:529-754 [30725]
    4. 1ami
      complexed with fs4, mic
      1. region a:529-754 [30726]
    5. 1fgh
      complexed with ath, fs4
      1. region a:529-754 [30729]
    6. 1nis
      complexed with fs4, ntc
      1. region a:529-754 [30730]
    7. 1nit
      complexed with fs4, so4
      1. region a:529-754 [30728]
    8. 1c96
      complexed with flc, fs4, ox; mutant
      1. region a:529-754 [30727]
    9. 1c97
      complexed with fs4, ici, ox; mutant
      1. region a:529-754 [30731]
2. Aconitase B, second N-terminal domain [75135]
  1. Escherichia coli [TaxId: 562] [75136] (1)
    1. 1l5j
      complexed with f3s, tra
      1. region a:161-372 [73593]
      2. region b:161-372 [73596]
3. Isopropylmalate isomerase LeuD [117454]
  3-isopropylmalate dehydratase small subunit
  1. Pyrococcus horikoshii [TaxId: 53953] [117455] (1)
    SQ O59393
    1. 1v7l
      1. chain a [113562]
      2. chain b [113563]
4. ron-responsive element binding protein 1, C-terminal domain [141974]
  1. Human (Homo sapiens) [TaxId: 9606] [141975] (3)
    SQ P21399 631-889
    1. 2b3y
      automatically matched to 2B3X A:631-889
      complexed with act, fmt, gol, sf4
      1. region a:631-889 [127803]
    2. 2b3y
      automatically matched to 2B3X A:631-889
      complexed with act, fmt, gol, sf4
      1. region b:631-889 [127805]
    3. 2b3x
      complexed with edo, sf4, zn
      1. region a:631-889 [127801]
IlvD/EDD C-terminal domain-like [141976] (1)
C-terminal part of Pfam 00920
1. 6-phosphogluconate dehydratase EDD [141977]
  1. Shewanella oneidensis [TaxId: 70863] [141978] (2)
    SQ Q8EEA0 419-608
    1. 2gp4
      1. region a:419-608 [135448]
    2. 2gp4
      automatically matched to 2GP4 A:419-608
      1. region b:419-608 [135450]
AF0055-like [141979] (1)
PF01989; DUF126; probable link between the LeuD-like and Phosphohistidine domain superfamilies (sequence similarity crosshits)
1. Hypothetical protein AF0055 [141980]
  1. Archaeoglobus fulgidus [TaxId: 2234] [141981] (1)
    SQ O30181 1-132
    1. 2hi6
      1. region a:1-132 [136523]