Structural Classification of Proteins
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Family: Macro domain

found in different proteins, including macro-H2a histone and the Appr-1"-p processing enzyme

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Macro domain-like [52948]
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest
  4. Superfamily: Macro domain-like [52949]
    link to SUPERFAMILY database - Superfamily
  5. Family: Macro domain [89724]
    found in different proteins, including macro-H2a histone and the Appr-1"-p processing enzyme

Protein Domains:

  1. Hypothetical protein AF1521 [89725]
    contains extra N-terminal strand
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89726] (4)
      SQ O28751
      1. 1vhu picpic
        structural genomics
        complexed with mes
        1. chain a [100703] picpiclink
      2. 2bfq picpic
        automatically matched to d1hjza_
        complexed with apr
        1. region a:1-192 [128452] picpiclink
      3. 1hjz picpic
        complexed with mes
        1. chain a [83520] picpiclink
        2. chain b [83521] picpiclink
      4. 2bfr picpic
        complexed with adp, mg
        1. chain a [116719] picpiclink
  2. Hypothetical protein YmbD [102530]
    1. Escherichia coli [TaxId: 562] [102531] (1)
      1. 1spv picpic
        structural genomics; NESG target ER58
        complexed with mes
        1. chain a [98957] picpiclink
  3. Hypothetical protein Ymr087W [110654]
    contains structural variations at both termini
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [110655] (3)
      SQ Q04299
      1. 1njr picpic
        complexed with xyl
        1. chain a [103858] picpiclink
      2. 1ty8 picpic
        complexed with adp, cl, na
        1. chain a [112826] picpiclink
      3. 1txz picpic
        complexed with apr, egl, na, so4
        1. chain a [112793] picpiclink
  4. Hypothetical protein BT1257 [142545]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [142546] (3)
      SQ Q8A8B0 2-155
      1. 2fg1 picpic
        automatically matched to 2AFC A:2-155
        1. region a:2-155 [133400] picpiclink
      2. 2afc picpic
        1. region a:2-155 [126676] picpiclink
      3. 2afc picpic
        automatically matched to 2AFC A:2-155
        1. region b:2-155 [126677] picpiclink
  5. Histone macro-H2a1.1 [142547]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [142548] (4)
      SQ Q02874 180-370
      1. 1yd9 picpic
        Isoform 1
        complexed with au
        1. region a:6-193 [122976] picpiclink
      2. 1yd9 picpic
        automatically matched to 1YD9 A:6-193
        complexed with au
        1. region b:6-192 [122977] picpiclink
      3. 1yd9 picpic
        automatically matched to 1YD9 A:6-193
        complexed with au
        1. region c:6-191 [122978] picpiclink
      4. 1yd9 picpic
        automatically matched to 1YD9 A:6-193
        complexed with au
        1. region d:6-193 [122979] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [142549] (8)
      SQ O75367 179-367! SQ O75367 181-371
      1. 1zr3 picpic
        automatically matched to 2FXK A:182-368
        complexed with mes
        1. region a:182-367 [125513] picpiclink
      2. 1zr3 picpic
        automatically matched to 2FXK A:182-368
        complexed with mes
        1. region b:182-367 [125514] picpiclink
      3. 1zr3 picpic
        automatically matched to 2FXK A:182-368
        complexed with mes
        1. region c:183-366 [125515] picpiclink
      4. 1zr3 picpic
        automatically matched to 2FXK A:182-368
        complexed with mes
        1. region d:183-366 [125516] picpiclink
      5. 2fxk picpic
        isoform 1
        mutant
        1. region a:182-368 [134323] picpiclink
      6. 2fxk picpic
        automatically matched to 2FXK A:182-368
        mutant
        1. region b:182-368 [134324] picpiclink
      7. 1zr5 picpic
        1. region a:179-367 [125525] picpiclink
      8. 1zr5 picpic
        automatically matched to 1ZR5 A:179-367
        1. region b:181-367 [125526] picpiclink
  6. Replicase polyprotein 1ab [142550]
    1. SARS coronavirus [TaxId: 227859] [142551] (4)
      SQ P59641 1002-1169
      1. 2acf picpic
        complexed with gol
        1. region a:184-351 [126547] picpiclink
      2. 2acf picpic
        automatically matched to 2ACF A:184-351
        complexed with gol
        1. region b:184-351 [126548] picpiclink
      3. 2acf picpic
        automatically matched to 2ACF A:184-351
        complexed with gol
        1. region c:184-351 [126549] picpiclink
      4. 2acf picpic
        automatically matched to 2ACF A:184-351
        complexed with gol
        1. region d:184-351 [126550] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk