Structural Classification of Proteins
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Family: Cystathionine synthase-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PLP-dependent transferase-like [53382]
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. Superfamily: PLP-dependent transferases [53383]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cystathionine synthase-like [53402]

Protein Domains:

  1. Cystathionine beta-lyase, CBL [53403]
    1. Escherichia coli [TaxId: 562] [53404] (6)
      1. 1cl1 picpic
        complexed with bct
        1. chain a [34395] picpiclink
        2. chain b [34396] picpiclink
      2. 2fq6 picpic
        automatically matched to d1cl1b_
        complexed with p3f
        1. region a:5-395 [133939] picpiclink
      3. 2fq6 picpic
        automatically matched to d1cl1b_
        complexed with p3f
        1. region b:5-395 [133940] picpiclink
      4. 2gqn picpic
        automatically matched to d1cl1b_
        complexed with blp
        1. region a:5-395 [135511] picpiclink
      5. 2gqn picpic
        automatically matched to d1cl1b_
        complexed with blp
        1. region b:5-395 [135512] picpiclink
      6. 1cl2 picpic
        complexed with ppg
        1. chain a [34397] picpiclink
        2. chain b [34398] picpiclink
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [64125] (1)
      1. 1ibj picpic
        complexed with co3, plp, so4
        1. chain a [62162] picpiclink
        2. chain c [62163] picpiclink
  2. Cystathionine gamma-synthase, CGS [53405]
    1. Escherichia coli [TaxId: 562] [53406] (1)
      1. 1cs1 picpic
        complexed with dhd
        1. chain a [34399] picpiclink
        2. chain b [34400] picpiclink
        3. chain c [34401] picpiclink
        4. chain d [34402] picpiclink
    2. Common tobacco (Nicotiana tabacum) [TaxId: 4097] [53407] (4)
      1. 1qgn picpic
        complexed with plp
        1. chain a [34403] picpiclink
        2. chain b [34404] picpiclink
        3. chain c [34405] picpiclink
        4. chain d [34406] picpiclink
        5. chain e [34407] picpiclink
        6. chain f [34408] picpiclink
        7. chain g [34409] picpiclink
        8. chain h [34410] picpiclink
      2. 1i43 picpic
        complexed with plp, pmc
        1. chain a [61652] picpiclink
        2. chain b [61653] picpiclink
        3. chain c [61654] picpiclink
        4. chain d [61655] picpiclink
        5. chain e [61656] picpiclink
        6. chain f [61657] picpiclink
        7. chain g [61658] picpiclink
        8. chain h [61659] picpiclink
        9. chain i [61660] picpiclink
        10. chain j [61661] picpiclink
        11. chain k [61662] picpiclink
        12. chain l [61663] picpiclink
      3. 1i41 picpic
        complexed with hen
        1. chain a [61639] picpiclink
        2. chain b [61640] picpiclink
        3. chain c [61641] picpiclink
        4. chain d [61642] picpiclink
        5. chain e [61643] picpiclink
        6. chain f [61644] picpiclink
        7. chain g [61645] picpiclink
        8. chain h [61646] picpiclink
        9. chain i [61647] picpiclink
        10. chain j [61648] picpiclink
        11. chain k [61649] picpiclink
        12. chain l [61650] picpiclink
      4. 1i48 picpic
        complexed with cco, plp
        1. chain a [61667] picpiclink
        2. chain b [61668] picpiclink
        3. chain c [61669] picpiclink
        4. chain d [61670] picpiclink
        5. chain e [61671] picpiclink
        6. chain f [61672] picpiclink
        7. chain g [61673] picpiclink
        8. chain h [61674] picpiclink
        9. chain i [61675] picpiclink
        10. chain j [61676] picpiclink
        11. chain k [61677] picpiclink
        12. chain l [61678] picpiclink
  3. Cystathionine gamma-lyase (CYS3) [82484]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82485] (1)
      1. 1n8p picpic
        complexed with plp
        1. chain a [80304] picpiclink
        2. chain b [80305] picpiclink
        3. chain c [80306] picpiclink
        4. chain d [80307] picpiclink
  4. Methionine gamma-lyase, MGL [64126]
    1. Trichomonas vaginalis, MGL1 [TaxId: 5722] [64127] (2)
      1. 1e5e picpic
        complexed with gol, ppj, so4; mutant
        1. chain a [59265] picpiclink
        2. chain b [59266] picpiclink
      2. 1e5f picpic
        complexed with gol, plp, so4
        1. chain a [59267] picpiclink
        2. chain b [59268] picpiclink
    2. Pseudomonas putida [TaxId: 303] [75271] (8)
      SQ P13254
      1. 1gc0 picpic
        complexed with llp
        1. chain a [70168] picpiclink
        2. chain b [70169] picpiclink
        3. chain c [70170] picpiclink
        4. chain d [70171] picpiclink
      2. 1gc2 picpic
        complexed with llp
        1. chain a [70172] picpiclink
        2. chain b [70173] picpiclink
        3. chain c [70174] picpiclink
        4. chain d [70175] picpiclink
      3. 2o7c picpic
        automatically matched to d1pg8a_
        complexed with so4
        1. region a:1-398 [148663] picpiclink
      4. 2o7c picpic
        automatically matched to d1pg8a_
        complexed with so4
        1. region b:501-898 [148664] picpiclink
      5. 2o7c picpic
        automatically matched to d1pg8a_
        complexed with so4
        1. region c:1001-1398 [148665] picpiclink
      6. 2o7c picpic
        automatically matched to d1pg8a_
        complexed with so4
        1. region d:1501-1898 [148666] picpiclink
      7. 1ukj picpic
        complexed with so4
        1. chain a [113259] picpiclink
        2. chain b [113260] picpiclink
        3. chain c [113261] picpiclink
        4. chain d [113262] picpiclink
      8. 1pg8 picpic
        complexed with peg, plp, so4
        1. chain a [104150] picpiclink
        2. chain b [104151] picpiclink
        3. chain c [104152] picpiclink
        4. chain d [104153] picpiclink
    3. Trichomonas vaginalis, MGL2 [TaxId: 5722] [110683] (1)
      SQ O15565
      1. 1pff picpic
        complexed with egl, peg
        1. chain a [104143] picpiclink
        2. chain b [104144] picpiclink
    4. Citrobacter freundii [TaxId: 546] [142663] (1)
      SQ Q84AR1 2-398
      1. 1y4i picpic
        complexed with so4
        1. region a:2-398 [122619] picpiclink
  5. Modulator in mal gene expression, MalY [53408]
    1. Escherichia coli [TaxId: 562] [53409] (1)
      1. 1d2f picpic
        1. chain a [34411] picpiclink
        2. chain b [34412] picpiclink
  6. Cystalysin [53410]
    PLP-dependent haemolytic enzyme
    1. Treponema denticola [TaxId: 158] [53411] (2)
      1. 1c7n picpic
        complexed with plp
        1. chain a [34413] picpiclink
        2. chain b [34414] picpiclink
        3. chain c [34415] picpiclink
        4. chain d [34416] picpiclink
        5. chain e [34417] picpiclink
        6. chain f [34418] picpiclink
        7. chain g [34419] picpiclink
        8. chain h [34420] picpiclink
      2. 1c7o picpic
        complexed with ppg
        1. chain a [34421] picpiclink
        2. chain b [34422] picpiclink
        3. chain c [34423] picpiclink
        4. chain d [34424] picpiclink
        5. chain e [34425] picpiclink
        6. chain f [34426] picpiclink
        7. chain g [34427] picpiclink
        8. chain h [34428] picpiclink
  7. NifS-like protein/selenocysteine lyase [53412]
    1. Thermotoga maritima [TaxId: 2336] [53413] (2)
      1. 1eg5 picpic
        complexed with plp, so4; mutant
        1. chain a [34429] picpiclink
        2. chain b [34430] picpiclink
      2. 1ecx picpic
        complexed with cys, plp
        1. chain a [34431] picpiclink
        2. chain b [34432] picpiclink
    2. Escherichia coli [TaxId: 562] [53414] (5)
      gene product CsdB
      1. 1jf9 picpic
        complexed with plp
        1. chain a [62931] picpiclink
      2. 1kmj picpic
        complexed with plp
        1. chain a [68695] picpiclink
      3. 1kmk picpic
        complexed with cse, csz, plp
        1. chain a [68696] picpiclink
      4. 1i29 picpic
        complexed with lpg, plp
        1. chain a [83664] picpiclink
      5. 1c0n picpic
        complexed with acy, plp
        1. chain a [34433] picpiclink
  8. Cysteine desulfurase IscS [89755]
    1. Escherichia coli [TaxId: 562] [89756] (1)
      1. 1p3w picpic
        complexed with plp
        1. chain a [87752] picpiclink
        2. chain b [87753] picpiclink
  9. Alanine-glyoxylate aminotransferase [89757]
    1. Human (Homo sapiens) [TaxId: 9606] [89758] (2)
      1. 1h0c picpic
        complexed with aoa, gol, plp
        1. chain a [83424] picpiclink
      2. 1j04 picpic
        complexed with aoa, gol; mutant
        1. chain a [90734] picpiclink
    2. Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690] [102598] (1)
      alr1004
      1. 1vjo picpic
        structural genomics
        complexed with plp
        1. chain a [100827] picpiclink
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142664] (1)
      SQ P43567 3-384
      1. 2bkw picpic
        complexed with glv
        1. region a:3-384 [128714] picpiclink
  10. Subgroup IV putative aspartate aminotransferase [102599]
    1. Thermus thermophilus [TaxId: 274] [102600] (1)
      1. 1iug picpic
        complexed with po4
        1. chain a [90699] picpiclink
        2. chain b [90700] picpiclink
  11. Kynureninase [102601]
    1. Pseudomonas fluorescens [TaxId: 294] [102602] (1)
      1. 1qz9 picpic
        complexed with cl, p3g, plp
        1. chain a [96621] picpiclink
  12. 2-aminoethylphosphonate transaminase [82486]
    1. Salmonella typhimurium [TaxId: 90371] [82487] (1)
      1. 1m32 picpic
        complexed with mse, plp, po4, poa
        1. chain a [78508] picpiclink
        2. chain b [78509] picpiclink
        3. chain c [78510] picpiclink
        4. chain d [78511] picpiclink
        5. chain e [78512] picpiclink
        6. chain f [78513] picpiclink
  13. Cystine C-S lyase C-des [53415]
    1. Synechocystis sp. [TaxId: 1143] [53416] (4)
      1. 1elu picpic
        complexed with k, pda; mutant
        1. chain a [34434] picpiclink
        2. chain b [34435] picpiclink
      2. 1elq picpic
        complexed with k, plp; mutant
        1. chain a [34436] picpiclink
        2. chain b [34437] picpiclink
      3. 1n2t picpic
        complexed with gly, k, plp; mutant
        1. chain a [79858] picpiclink
        2. chain b [79859] picpiclink
      4. 1n31 picpic
        complexed with cys, k, plp; mutant
        1. chain a [79867] picpiclink
        2. chain b [79868] picpiclink
  14. Probable cysteine desulfurase SufS [110684]
    1. Synechocystis sp. PCC 6803 [TaxId: 1148] [110685] (1)
      SQ Q55793 # slr0077
      1. 1t3i picpic
        complexed with 2os, gol, plp
        1. chain a [106354] picpiclink
        2. chain b [106355] picpiclink
  15. O-acetyl-L-homoserine sulfhydrylase [142665]
    1. Thermus thermophilus [TaxId: 274] [142666] (2)
      SQ Q93I77 1-421
      1. 2ctz picpic
        complexed with plp
        1. region a:1-421 [130800] picpiclink
      2. 2ctz picpic
        automatically matched to 2CTZ A:1-421
        complexed with plp
        1. region b:1-421 [130801] picpiclink
  16. 3-hydroxykynurenine transaminase [142667]
    1. Malaria mosquito (Anopheles gambiae) [TaxId: 7165] [142668] (8)
      SQ Q4LAM2 2-389
      1. 2ch1 picpic
        complexed with gol
        1. region a:2-389 [130439] picpiclink
      2. 2ch1 picpic
        automatically matched to 2CH1 A:2-389
        complexed with gol
        1. region b:2-389 [130440] picpiclink
      3. 2ch1 picpic
        automatically matched to 2CH1 A:2-389
        complexed with gol
        1. region c:2-389 [130441] picpiclink
      4. 2ch1 picpic
        automatically matched to 2CH1 A:2-389
        complexed with gol
        1. region d:2-389 [130442] picpiclink
      5. 2ch2 picpic
        automatically matched to 2CH1 A:2-389
        complexed with ky1
        1. region a:3-389 [130443] picpiclink
      6. 2ch2 picpic
        automatically matched to 2CH1 A:2-389
        complexed with ky1
        1. region b:3-389 [130444] picpiclink
      7. 2ch2 picpic
        automatically matched to 2CH1 A:2-389
        complexed with ky1
        1. region c:3-389 [130445] picpiclink
      8. 2ch2 picpic
        automatically matched to 2CH1 A:2-389
        complexed with ky1
        1. region d:3-389 [130446] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk