Fold: Microbial ribonucleases

single helix packs against antiparallel beta-sheet

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Microbial ribonucleases [53932]
   single helix packs against antiparallel beta-sheet

Superfamilies:

1. Microbial ribonucleases [53933] (3)
   uperfamily
   1. Bacterial ribonucleases [81307] (5)
      1. Barnase [81305]
         1. Bacillus amyloliquefaciens [TaxId: 1390] [53945] (60)
            1. 2c4b
               automatically matched to d1b3sa_
               complexed with 2pe, edo, fmt, gol, mes, so4, unx; mutant
               1. region a:3-110 [129801]
            2. 2c4b
               automatically matched to d1b3sa_
               complexed with 2pe, edo, fmt, gol, mes, so4, unx; mutant
               1. region b:3-110 [129803]
            3. 1a2p
               complexed with zn
               1. chain a [36140]
               2. chain b [36141]
               3. chain c [36142]
            4. 1b20
               complexed with zn
               1. chain a [36207]
               2. chain b [36208]
               3. chain c [36209]
            5. 1b2x
               complexed with zn
               1. chain a [36210]
               2. chain b [36211]
               3. chain c [36212]
            6. 1b2s
               complexed with sul; mutant
               1. chain a [36213]
               2. chain b [36214]
               3. chain c [36215]
            7. 1brn
               1. chain l [36143]
               2. chain m [36144]
            8. 2f56
               automatically matched to d1b27a_
               complexed with ure, zn
               1. region a:1-108 [132974]
            9. 2f56
               automatically matched to d1b27a_
               complexed with ure, zn
               1. region b:1-108 [132975]
            10. 2f56
                automatically matched to d1b27a_
                complexed with ure, zn
                1. region c:1-108 [132976]
            11. 1x1y
                automatically matched to d1b27a_
                mutant
                1. region a:3-110 [121610]
            12. 1x1y
                automatically matched to d1b27a_
                mutant
                1. region b:3-110 [121611]
            13. 1x1y
                automatically matched to d1b27a_
                mutant
                1. region c:3-110 [121612]
            14. 1bri
                mutant
                1. chain a [36145]
                2. chain b [36146]
                3. chain c [36147]
            15. 1brk
                complexed with zn; mutant
                1. chain a [36148]
                2. chain b [36149]
                3. chain c [36150]
            16. 1brh
                complexed with zn; mutant
                1. chain a [36151]
                2. chain b [36152]
                3. chain c [36153]
            17. 1b2z
                complexed with zn
                1. chain a [36216]
                2. chain b [36217]
                3. chain c [36218]
            18. 2f5m
                automatically matched to d1b27a_
                complexed with brj
                1. region a:1-108 [133001]
            19. 2f5m
                automatically matched to d1b27a_
                complexed with brj
                1. region b:1-108 [133002]
            20. 2f5m
                automatically matched to d1b27a_
                complexed with brj
                1. region c:1-108 [133003]
            21. 1bsc
                mutant
                1. chain a [36154]
                2. chain b [36155]
                3. chain c [36156]
            22. 1bnf
                mutant
                1. chain a [36166]
                2. chain b [36167]
                3. chain c [36168]
            23. 1brs
                mutant
                1. chain a [36163]
                2. chain b [36164]
                3. chain c [36165]
            24. 1brj
                complexed with zn; mutant
                1. chain a [36160]
                2. chain b [36161]
                3. chain c [36162]
            25. 1bsb
                mutant
                1. chain a [36157]
                2. chain b [36158]
                3. chain c [36159]
            26. 1bnj
                1. chain a [36172]
                2. chain b [36173]
                3. chain c [36174]
            27. 2f4y
                automatically matched to d1b27a_
                complexed with zn
                1. region a:1-108 [132960]
            28. 2f4y
                automatically matched to d1b27a_
                complexed with zn
                1. region b:1-108 [132961]
            29. 2f4y
                automatically matched to d1b27a_
                complexed with zn
                1. region c:1-108 [132962]
            30. 2f5w
                automatically matched to d1b27a_
                complexed with tou, zn
                1. region a:1-108 [133012]
            31. 2f5w
                automatically matched to d1b27a_
                complexed with tou, zn
                1. region b:1-108 [133013]
            32. 2f5w
                automatically matched to d1b27a_
                complexed with tou, zn
                1. region c:1-108 [133014]
            33. 1bng
                mutant
                1. chain a [36184]
                2. chain b [36185]
                3. chain c [36186]
            34. 1b21
                complexed with zn
                1. chain a [36219]
                2. chain b [36220]
                3. chain c [36221]
            35. 1bsa
                mutant
                1. chain a [36169]
                2. chain b [36170]
                3. chain c [36171]
            36. 1yvs
                trimeric domain swapped form
                complexed with so4
                1. chain a [36222]
            37. 1bns
                mutant
                1. chain a [36178]
                2. chain b [36179]
                3. chain c [36180]
            38. 1bne
                mutant
                1. chain a [36181]
                2. chain b [36182]
                3. chain c [36183]
            39. 1x1w
                automatically matched to d1b27a_
                mutant
                1. region a:3-110 [121604]
            40. 1x1w
                automatically matched to d1b27a_
                mutant
                1. region b:1-110 [121605]
            41. 1x1w
                automatically matched to d1b27a_
                mutant
                1. region c:2-110 [121606]
            42. 1bse
                mutant
                1. chain a [36175]
                2. chain b [36176]
                3. chain c [36177]
            43. 1bao
                complexed with zn; mutant
                1. chain a [36187]
                2. chain b [36188]
                3. chain c [36189]
            44. 1b27
                mutant
                1. chain a [36223]
                2. chain b [36224]
                3. chain c [36225]
            45. 1b2u
                mutant
                1. chain a [36226]
                2. chain b [36227]
                3. chain c [36228]
            46. 1x1x
                automatically matched to d1b27a_
                mutant
                1. region a:1-110 [121607]
            47. 1x1x
                automatically matched to d1b27a_
                mutant
                1. region b:1-110 [121608]
            48. 1x1x
                automatically matched to d1b27a_
                mutant
                1. region c:2-110 [121609]
            49. 1bni
                1. chain a [36193]
                2. chain b [36194]
                3. chain c [36195]
            50. 1brg
                complexed with zn; mutant
                1. chain a [36190]
                2. chain b [36191]
                3. chain c [36192]
            51. 1rnb
                complexed with so4
                1. chain a [36196]
            52. 1x1u
                automatically matched to d1b27a_
                mutant
                1. region a:1-110 [121598]
            53. 1x1u
                automatically matched to d1b27a_
                mutant
                1. region b:1-110 [121599]
            54. 1x1u
                automatically matched to d1b27a_
                mutant
                1. region c:2-110 [121600]
            55. 1ban
                mutant
                1. chain a [36197]
                2. chain b [36198]
                3. chain c [36199]
            56. 1bsd
                mutant
                1. chain a [36200]
                2. chain b [36201]
                3. chain c [36202]
            57. 1bgs
                mutant
                1. chain a [36203]
                2. chain b [36204]
                3. chain c [36205]
            58. 1b3s
                mutant
                1. chain a [36229]
                2. chain b [36230]
                3. chain c [36231]
            59. 1fw7
                1. chain a [83262]
            60. 1bnr
                1. chain a [36206]
      2. Binase [81306]
         1. Bacillus intermedius [TaxId: 1400] [53946] (5)
            1. 1gou
               1. chain a [65429]
               2. chain b [65430]
            2. 1gov
               complexed with so4
               1. chain a [65431]
               2. chain b [65432]
            3. 1goy
               complexed with 3gp, so4
               1. chain a [65433]
               2. chain b [65434]
            4. 2rbi
               mutant
               1. chain a [36232]
               2. chain b [36233]
            5. 1buj
               1. chain a [36234]
      3. RNase Sa [53935]
         1. Streptomyces aureofaciens [TaxId: 1894] [53936] (22)
            SQ P05798
            1. 1lni
               complexed with gol, so4
               1. chain a [74046]
               2. chain b [74047]
            2. 1t2h
               complexed with sul; mutant
               1. chain a [112217]
               2. chain b [112218]
            3. 1t2i
               mutant
               1. chain a [112219]
            4. 1rge
               complexed with 2gp, so4
               1. chain a [36028]
               2. chain b [36029]
            5. 1rgg
               complexed with so4
               1. chain a [36030]
               2. chain b [36031]
            6. 1i8v
               complexed with sul; mutant
               1. chain a [61985]
               2. chain b [61986]
            7. 1rgh
               complexed with so4
               1. chain a [36032]
               2. chain b [36033]
            8. 1rgf
               complexed with so4
               1. chain a [36034]
               2. chain b [36035]
            9. 1i70
               complexed with sul; mutant
               1. chain a [61862]
               2. chain b [61863]
            10. 1gmp
                complexed with 2gp, so4
                1. chain a [36036]
                2. chain b [36037]
            11. 1box
                mutant
                1. chain a [36038]
            12. 1ay7
                1. chain a [36041]
            13. 1gmq
                complexed with so4
                1. chain a [36039]
                2. chain b [36040]
            14. 1uci
                complexed with so4; mutant
                1. chain a [99175]
                2. chain b [99176]
            15. 1gmr
                complexed with 2gp, so4
                1. chain a [36042]
                2. chain b [36043]
            16. 1uck
                complexed with so4; mutant
                1. chain a [99179]
                2. chain b [99180]
            17. 1rsn
                complexed with sgp, so4
                1. chain a [36046]
                2. chain b [36047]
            18. 1ucl
                complexed with so4; mutant
                1. chain a [99181]
                2. chain b [99182]
            19. 1ucj
                complexed with so4; mutant
                1. chain a [99177]
                2. chain b [99178]
            20. 2sar
                complexed with gmp, so4
                1. chain a [36044]
                2. chain b [36045]
            21. 1sar
                complexed with so4
                1. chain a [36048]
                2. chain b [36049]
            22. 1c54
                1. chain a [64764]
      4. Cytotoxic RNase Sa3 [82563]
         1. Streptomyces aureofaciens [TaxId: 1894] [82564] (2)
            1. 1mgr
               complexed with sul
               1. chain a [79106]
            2. 1mgw
               complexed with li
               1. chain a [79109]
      5. Ribonuclease Sa2 [110767]
         1. Streptomyces aureofaciens [TaxId: 1894] [110768] (2)
            SQ Q53752
            1. 1pyl
               complexed with so4
               1. chain a [104391]
               2. chain b [104392]
            2. 1py3
               complexed with so4
               1. chain a [104386]
               2. chain b [104387]
               3. chain c [104388]
   2. Fungal ribonucleases [81311] (5)
      1. RNase F1 [53937]
         1. Fusarium moniliforme [TaxId: 117187] [53938] (4)
            1. 1fus
               1. chain a [36050]
            2. 1fut
               complexed with 2gp
               1. chain a [36051]
            3. 1rcl
               1. chain a [36052]
            4. 1rck
               1. chain a [36053]
      2. RNase T1 [53939]
         1. Aspergillus oryzae [TaxId: 5062] [53940] (64)
            1. 1i0v
               complexed with 2gp, ca; mutant
               1. chain a [36054]
            2. 9rnt
               complexed with ca
               1. chain a [36055]
            3. 1lov
               complexed with 3gp, ca; mutant
               1. chain a [74166]
            4. 1loy
               complexed with 3gp, ca; mutant
               1. chain a [74168]
            5. 4gsp
               complexed with 3gp, ca, sgp
               1. chain a [36057]
            6. 1rga
               complexed with ca, gmp
               1. chain a [36056]
            7. 1i0x
               complexed with 2gp, ca; mutant
               1. chain a [36059]
               2. chain b [36060]
               3. chain c [36061]
               4. chain d [36062]
            8. 8rnt
               complexed with zn
               1. chain a [36058]
            9. 2gsp
               complexed with 3gp, ca, sgp
               1. chain a [36064]
            10. 1i3i
                complexed with 2gp, ca; mutant
                1. chain a [61593]
            11. 1q9e
                complexed with tmn; mutant
                1. chain a [96269]
                2. chain b [96270]
                3. chain c [96271]
            12. 1hyf
                complexed with 2gp, sr; mutant
                1. chain a [36065]
            13. 1rgk
                complexed with 2am, ca; mutant
                1. chain a [36067]
            14. 4bir
                complexed with ca; mutant
                1. chain a [36068]
            15. 5gsp
                complexed with 3gp, ca
                1. chain a [36072]
            16. 3gsp
                complexed with 3gp, ca, sgp
                1. chain a [36075]
            17. 1rn1
                complexed with so4
                1. chain a [36122]
                2. chain b [36123]
                3. chain c [36124]
            18. 1fzu
                complexed with 2gp, ca; mutant
                1. chain a [36071]
            19. 2rnt
                complexed with ca, gpg
                1. chain a [36063]
            20. 2aae
                complexed with ca, po4; mutant
                1. chain a [36066]
            21. 5bu4
                complexed with 2gp, ca
                1. chain a [36074]
            22. 1i2g
                complexed with 2gp, ca; mutant
                1. chain a [61567]
            23. 2hoh
                complexed with 2gp, ca, na, po4; mutant
                1. chain a [36077]
                2. chain b [36078]
                3. chain c [36079]
                4. chain d [36080]
            24. 1rhl
                complexed with 2gp, ca; mutant
                1. chain a [36082]
            25. 3rnt
                complexed with ca, vo4
                1. chain a [36069]
            26. 1rn4
                complexed with ca; mutant
                1. chain a [36073]
            27. 6rnt
                complexed with 2am, ca
                1. chain a [36070]
            28. 1i2e
                complexed with 2gp, ca; mutant
                1. chain a [61565]
            29. 4bu4
                complexed with 2gp, ca
                1. chain a [36081]
            30. 1bvi
                complexed with 2gp, ca
                1. chain a [36090]
                2. chain b [36091]
                3. chain c [36092]
                4. chain d [36093]
            31. 3hoh
                complexed with 2gp, ca; mutant
                1. chain a [36085]
                2. chain b [36086]
                3. chain c [36087]
                4. chain d [36088]
            32. 1g02
                complexed with 2gp, ca; mutant
                1. chain a [36076]
            33. 1bu4
                complexed with 2gp, ca
                1. chain a [36100]
            34. 5hoh
                complexed with 2gp, ca; mutant
                1. chain a [36096]
                2. chain b [36097]
                3. chain c [36098]
                4. chain d [36099]
            35. 3bu4
                complexed with 2gp, ca
                1. chain a [36089]
            36. 1rgl
                complexed with 2gp, ca; mutant
                1. chain a [36094]
            37. 7rnt
                complexed with 2am, ca; mutant
                1. chain a [36105]
            38. 1bir
                complexed with 2gp, ca; mutant
                1. chain a [36083]
                2. chain b [36084]
            39. 1i2f
                complexed with 2gp, ca; mutant
                1. chain a [61566]
            40. 1low
                complexed with 3gp, ca; mutant
                1. chain a [74167]
            41. 1rls
                complexed with 3gp, ca
                1. chain a [36095]
            42. 1lra
                complexed with 2gp, na; mutant
                1. chain a [36112]
            43. 1fys
                complexed with 2gp, ca; mutant
                1. chain a [36104]
            44. 2bu4
                complexed with 2gp, ca
                1. chain a [36114]
            45. 4hoh
                complexed with 2gp, ca; mutant
                1. chain a [36118]
                2. chain b [36119]
                3. chain c [36120]
                4. chain d [36121]
            46. 3bir
                complexed with 2gp, ca; mutant
                1. chain a [36132]
            47. 1rgc
                complexed with 3gp, ca; mutant
                1. chain a [36102]
                2. chain b [36103]
            48. 7gsp
                complexed with po4, sgp
                1. chain a [36108]
                2. chain b [36109]
            49. 1gsp
                complexed with ca, sgp
                1. chain a [36117]
            50. 2aad
                complexed with 2gp, ca; mutant
                1. chain a [36110]
                2. chain b [36111]
            51. 1det
                complexed with 2gp, cbm, na
                1. chain a [36101]
            52. 1b2m
                complexed with ch2; mutant
                1. chain a [36115]
                2. chain b [36116]
            53. 5bir
                complexed with 2gp, ca; mutant
                1. chain a [36106]
                2. chain b [36107]
            54. 6gsp
                complexed with 3gp, ca
                1. chain a [36125]
            55. 1rnt
                complexed with 2gp
                1. chain a [36113]
            56. 1ch0
                1. chain a [36129]
                2. chain b [36130]
                3. chain c [36131]
            57. 1i3f
                complexed with 2gp, ca; mutant
                1. chain a [61591]
            58. 4rnt
                mutant
                1. chain a [36126]
            59. 1trq
                complexed with 2gp, ca; mutant
                1. chain a [36127]
                2. chain b [36128]
            60. 2bir
                complexed with 2gp, ca
                1. chain a [36133]
            61. 1trp
                complexed with 2gp, ca; mutant
                1. chain a [36134]
                2. chain b [36135]
            62. 5rnt
                complexed with pgp
                1. chain a [36136]
            63. 1ygw
                mutant
                1. chain a [36137]
            64. 1iyy
                mutant
                1. chain a [90724]
         2. Aspergillus niger [TaxId: 5061] [53941] (1)
            1. 1hz1
               complexed with 2gp, mg; mutant
               1. chain a [36138]
      3. RNase U2 [53942]
         1. Ustilago sphaerogena [TaxId: 5271] [53943] (1)
            1. 1rtu
               complexed with ias, so4
               1. chain a [36139]
      4. RNase Ms [53947]
         1. Molsin (Aspergillus saitoi) [TaxId: 5063] [53948] (2)
            1. 1rds
               complexed with gpc
               1. chain a [36236]
            2. 1rms
               complexed with 3gp
               1. chain a [36235]
   3. Ribotoxin [81310] (2)
      the fungal cytotoxic ribonucleases with many insertions in the common fold
      1. Restrictocin [81308]
         1. Fungus (Aspergillus restrictus) [TaxId: 5064] [53952] (4)
            1. 1jbs
               complexed with ch3, k
               1. chain a [66486]
               2. chain b [66487]
            2. 1aqz
               complexed with po4
               1. chain a [36238]
               2. chain b [36239]
            3. 1jbr
               complexed with a23, k
               1. chain a [66484]
               2. chain b [66485]
            4. 1jbt
               complexed with k
               1. chain a [66488]
               2. chain b [66489]
      2. alpha-Sarcin [81309]
         1. Fungus (Aspergillus giganteus) [TaxId: 5060] [53953] (2)
            1. 1de3
               1. chain a [36240]
            2. 1r4y
               delta(7-22) mutant
               1. chain a [97056]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk