Structural Classification of Proteins
Superfamily: dsRNA-binding domain-like
uperfamily
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a+b)
[53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:
dsRBD-like
[54767]
alpha-beta(3)-alpha; 2 layers: alpha/beta
Superfamily:
dsRNA-binding domain-like
[54768]
uperfamily
Families:
Double-stranded RNA-binding domain (dsRBD)
[54769] (15)
Pfam 00035
Double-stranded RNA-binding protein A, second dsRBD [54770]
Xenopus laevis
[TaxId: 8355]
[54771] (1)
1di2
complexed with dsRNA
chain a
[38780]
chain b
[38781]
Staufen, domain III [54772]
Fruit fly (Drosophila melanogaster)
[TaxId: 7227]
[54773] (2)
1ekz
chain a
[38783]
1stu
CASP1
chain a
[38782]
dsRNA-dependent protein kinase pkr [54774]
contains tandem repeat of two dsRBD
Human (Homo sapiens)
[TaxId: 9606]
[54775] (1)
1qu6
region a:1-90
[38784]
region a:91-179
[38785]
Mouse (Mus musculus)
[TaxId: 10090]
[143201] (2)
SQ
Q03963
1-85! SQ
Q03963
96-181
1x49
1st dsRBD
region a:8-92
[121682]
1x48
2nd dsRBD
region a:8-83
[121681]
RNase III, C-terminal domain [54776]
Thermotoga maritima
[TaxId: 2336]
[82644] (1)
1o0w
CASP5
region a:168-236
[80752]
region b:168-237
[80754]
Aquifex aeolicus
[TaxId: 63363]
[102927] (19)
2nug
automatically matched to d1rc7a2
complexed with mg
region a:151-218
[148453]
2nug
automatically matched to d1rc7a2
complexed with mg
region b:151-220
[148455]
2ez6
automatically matched to d1rc7a2
complexed with mg; mutant
region a:151-220
[132617]
2ez6
automatically matched to d1rc7a2
complexed with mg; mutant
region b:151-220
[132619]
1rc7
complexed with trs; mutant
region a:151-220
[97290]
1yz9
automatically matched to d1rc7a2
complexed with so4; mutant
region a:151-220
[124272]
1yz9
automatically matched to d1rc7a2
complexed with so4; mutant
region b:151-220
[124274]
1yyk
automatically matched to d1rc7a2
complexed with trs
region a:151-220
[124219]
1yyk
automatically matched to d1rc7a2
complexed with trs
region b:151-220
[124221]
2nuf
automatically matched to d1rc7a2
complexed with mg
region a:151-220
[148449]
2nuf
automatically matched to d1rc7a2
complexed with mg
region b:151-220
[148451]
1yyo
automatically matched to d1rc7a2
complexed with trs; mutant
region a:151-220
[124245]
1yyo
automatically matched to d1rc7a2
complexed with trs; mutant
region b:151-220
[124247]
2nue
automatically matched to d1rc7a2
region a:151-220
[148445]
2nue
automatically matched to d1rc7a2
region b:151-220
[148447]
1yyw
automatically matched to d1rc7a2
region a:151-220
[124257]
1yyw
automatically matched to d1rc7a2
region b:151-220
[124259]
1yyw
automatically matched to d1rc7a2
region c:151-219
[124261]
1yyw
automatically matched to d1rc7a2
region d:151-220
[124263]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[110913] (3)
SQ
Q02555
364-447 ! SQ
Q02555
366-453 ! SQ
Q02555
363-443
1t4o
chain a
[106425]
chain b
[106426]
1t4n
chain a
[106424]
1t4l
chain b
[106423]
staufen homolog 2 [110914]
Mouse (Mus musculus)
[TaxId: 10090]
[110915] (1)
SQ
Q9D5N7
3-78
1uhz
Structural genomics target
chain a
[107855]
ATP-dependent RNA helicase A, Dhx9 [117901]
formerly hypothetical protein bab28848
Mouse (Mus musculus)
[TaxId: 10090]
[117902] (2)
SQ
O70133
4-89, 168-262
1whq
Structural genomics target; 1st dsRBD
chain a
[114649]
1uil
Structural genomics target; 2nd dsRDB
chain a
[113255]
tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) [117903]
Mouse (Mus musculus)
[TaxId: 10090]
[117904] (1)
SQ
Q9D7B1
350-464
1whn
Structural genomics target
chain a
[114648]
dsRNA-specific editase 1 [143202]
duplication: contains two dsRBD domains
Rat (Rattus norvegicus)
[TaxId: 10116]
[143203] (2)
SQ
P51400
231-301! SQ
P51400
74-146
2b7t
1st dsRBD
region a:1-73
[128055]
2b7v
2nd dsRBD
region a:1-71
[128056]
Interferon-inducible double stranded RNA-dependent protein kinase activator A [143204]
Human (Homo sapiens)
[TaxId: 9606]
[143205] (1)
SQ
O75569
32-104
2dix
region a:7-79
[131534]
Dgcr8 protein [143206]
Human (Homo sapiens)
[TaxId: 9606]
[143207] (1)
SQ
Q8WYQ5
502-586
1x47
region a:8-92
[121680]
TAR RNA-binding protein 2 [143208]
duplication: contains three dsRBD
Human (Homo sapiens)
[TaxId: 9606]
[143209] (1)
SQ
Q15633
150-225
2cpn
2nd dsRBD
region a:150-225
[130703]
Spermatid perinuclear RNA-binding protein [143210]
Human (Homo sapiens)
[TaxId: 9606]
[143211] (1)
SQ
Q96SI9
378-461
2dmy
2nd dsRBD
region a:8-91
[131576]
The homologous-pairing domain of Rad52 recombinase
[82645] (1)
contains N- and C-terminal extensions to the common fold involved in the oligomerization
The homologous-pairing domain of Rad52 recombinase [82646]
forms an undecameric ring structure; binds to ssDNA and dsDNA
Human (Homo sapiens)
[TaxId: 9606]
[82647] (2)
1kn0
chain a
[77444]
chain b
[77445]
chain c
[77446]
chain d
[77447]
chain e
[77448]
chain f
[77449]
chain g
[77450]
chain h
[77451]
chain i
[77452]
chain j
[77453]
chain k
[77454]
1h2i
chain a
[76550]
chain b
[76551]
chain c
[76552]
chain d
[76553]
chain e
[76554]
chain f
[76555]
chain g
[76556]
chain h
[76557]
chain i
[76558]
chain j
[76559]
chain k
[76560]
chain l
[76561]
chain m
[76562]
chain n
[76563]
chain o
[76564]
chain p
[76565]
chain q
[76566]
chain r
[76567]
chain s
[76568]
chain t
[76569]
chain u
[76570]
chain v
[76571]
Ribosomal S5 protein, N-terminal domain
[54778] (3)
Ribosomal S5 protein, N-terminal domain [54779]
lacks the N-terminal helix
Bacillus stearothermophilus
[TaxId: 1422]
[54780] (1)
1pkp
region a:4-77
[38787]
Thermus thermophilus
[TaxId: 274]
[54781] (36)
SQ
P27152
2uub
automatically matched to d1i94e2
complexed with 6mz, cm0, k, mg, par, zn
region e:5-73
[139937]
1fjg
complexed with mg, par, scm, sry, zn
region e:5-73
[38789]
1j5e
complexed with unx, zn
region e:5-73
[71548]
2uxc
automatically matched to d1i94e2
complexed with k, mg, par, zn
region e:5-73
[140008]
2uuc
automatically matched to d1i94e2
complexed with 6mz, cm0, k, mg, par, zn
region e:5-73
[139957]
2uua
automatically matched to d1i94e2
complexed with 6mz, cm0, k, mg, par, zn
region e:5-73
[139917]
1xmq
complexed with mg, par, t6a, zn
region e:5-73
[115534]
1n32
complexed with mg, par, psu, zn
region e:5-73
[79874]
2uu9
automatically matched to d1i94e2
complexed with 6mz, cm0, k, mg, par, zn
region e:5-73
[139897]
1xnq
complexed with mg, par, zn
region e:5-73
[115608]
1xnr
complexed with mg, par, zn
region e:5-73
[115630]
1hr0
complexed with mg, zn
region e:5-73
[38790]
1hnz
complexed with hyg, mg, zn
region e:5-73
[38791]
2j02
automatically matched to d1i94e2
complexed with 5mu, mg, par, zn
region e:5-73
[137870]
2j00
automatically matched to d1i94e2
complexed with 5mu, mg, par, zn
region e:5-73
[137843]
1xmo
complexed with mg, mnu, par, t6a, zn
region e:5-73
[115504]
1hnw
complexed with mg, tac, zn
region e:5-73
[38792]
2e5l
automatically matched to d1i94e2
complexed with zn
region e:5-73
[132029]
1i94
complexed with mg, wo2, zn
region e:2-73
[61996]
1hnx
complexed with mg, pcy, zn
region e:5-73
[38793]
1n33
complexed with mg, par, psu, zn
region e:5-73
[79896]
2hhh
automatically matched to d1i94e2
complexed with ksg
region e:5-73
[136481]
1i96
complexed with mg, wo2, zn
region e:2-73
[62040]
1n34
complexed with zn
region e:5-73
[79918]
1i97
complexed with mg, tac, wo2, zn
region e:2-73
[62063]
1n36
complexed with zn
region e:5-73
[79941]
1i95
complexed with ede, mg, wo2, zn
region e:2-73
[62018]
2f4v
automatically matched to d1i94e2
complexed with ab9, d2c, k, mg, zn
region e:5-73
[132942]
2hgp
automatically matched to d1i94e2
region h:5-73
[136425]
2hgi
automatically matched to d1i94e2
region h:5-73
[136404]
2hgr
automatically matched to d1i94e2
region h:5-73
[136446]
2ow8
automatically matched to d1i94e2
complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
region f:5-73
[139403]
1yl4
automatically matched to d1i94e2
region h:5-73
[123601]
2b64
automatically matched to d1i94e2
complexed with psu, yyg
region e:5-73
[127937]
2b9o
automatically matched to d1i94e2
complexed with psu, yyg
region e:5-73
[128167]
2b9m
automatically matched to d1i94e2
complexed with psu, yyg
region e:5-73
[128130]
Escherichia coli
[TaxId: 562]
[160202] (24)
SQ
P0A7W1
9-77
2qal
automatically matched to 2AVY E:9-77
complexed with mg, nmy
region e:9-77
[150218]
2qan
automatically matched to 2AVY E:9-77
complexed with mg, nmy
region e:9-77
[150272]
2qbf
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[150492]
2qbd
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[150438]
1vs5
automatically matched to 2AVY E:9-77
complexed with ksg, mg
region e:9-77
[144440]
3df1
automatically matched to 2AVY E:9-77
complexed with hyg, mg
region e:9-77
[157607]
3df3
automatically matched to 2AVY E:9-77
complexed with hyg, mg
region e:9-77
[157661]
1vs7
automatically matched to 2AVY E:9-77
complexed with ksg, mg
region e:9-77
[144481]
2qoy
automatically matched to 2AVY E:9-77
complexed with mg, nmy, scm
region e:9-77
[151095]
2qp0
automatically matched to 2AVY E:9-77
complexed with mg, nmy, scm
region e:9-77
[151148]
2avy
Representative structure
complexed with mg
region e:9-77
[144847]
2aw7
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[144890]
2qb9
automatically matched to 2AVY E:9-77
complexed with lll, mg
region e:9-77
[150332]
2qbb
automatically matched to 2AVY E:9-77
complexed with lll, mg
region e:9-77
[150385]
2i2p
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[145425]
2i2u
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[145467]
2qbh
automatically matched to 2AVY E:9-77
complexed with lll, mg
region e:9-77
[150546]
2qbj
automatically matched to 2AVY E:9-77
complexed with lll, mg
region e:9-77
[150600]
2qou
automatically matched to 2AVY E:9-77
complexed with mg, scm
region e:9-77
[150989]
2qow
automatically matched to 2AVY E:9-77
complexed with mg, scm
region e:9-77
[151042]
2z4m
automatically matched to 2AVY E:9-77
complexed with mg, par
region e:9-77
[154110]
2vho
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[153127]
2z4k
automatically matched to 2AVY E:9-77
complexed with mg, par
region e:9-77
[154056]
2vhp
automatically matched to 2AVY E:9-77
complexed with mg
region e:9-77
[153149]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk