Structural Classification of Proteins
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Fold: Alpha-lytic protease prodomain-like

core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Alpha-lytic protease prodomain-like [54805]
    core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta

Superfamilies:

  1. Alpha-lytic protease prodomain [54806] (1)
    link to SUPERFAMILY database - Superfamily
    1. Alpha-lytic protease prodomain [54807] (1) picpic
  2. GMP synthetase C-terminal dimerisation domain [54810] (1)
    link to SUPERFAMILY database - Superfamily
    1. GMP synthetase C-terminal dimerisation domain [54811] (1) picpic
  3. Prokaryotic type KH domain (KH-domain type II) [54814] (1)
    Prokaryotic and eukaryotic domains share a KH-motif but have different topologies
    link to SUPERFAMILY database - Superfamily
    1. Prokaryotic type KH domain (KH-domain type II) [54815] (9) picpic
  4. Probable GTPase Der, C-terminal domain [82653] (1)
    possible distant relative of the Era C-terminal domain lacking the KH motif
    link to SUPERFAMILY database - Superfamily
    1. Probable GTPase Der, C-terminal domain [82654] (1) picpic
  5. Ribosome-binding factor A, RbfA [89919] (1)
    possible distant homologue of the type I KH domain lacking the KH motif
    link to SUPERFAMILY database - Superfamily
    1. Ribosome-binding factor A, RbfA [89920] (5) picpic
  6. YhbC-like, N-terminal domain [75420] (1)
    link to SUPERFAMILY database - Superfamily
    1. YhbC-like, N-terminal domain [75421] (1) picpic
  7. BolA-like [82657] (1)
    link to SUPERFAMILY database - Superfamily
    1. BolA-like [82658] (2) picpic
      Pfam 01722
  8. Fe-S cluster assembly (FSCA) domain-like [117916] (2)
    similar putative active site with a conserved cysteine residue
    link to SUPERFAMILY database - Superfamily
    1. NifU C-terminal domain-like [117917] (3) picpic
      Pfam 01106
    2. PaaD-like [117922] (2) picpic
      Pfam 01883; DUF59
  9. Cation efflux protein cytoplasmic domain-like [160240] (1)
    1. Cation efflux protein cytoplasmic domain-like [160241] (2) picpic
      C=terminal part of Pfam 01545
  10. EspE N-terminal domain-like [160246] (1)
    contains extra C-terminal helix that packs against shorter N-terminal helix
    1. GSPII protein E N-terminal domain-like [160247] (2) picpic
      Pfam 05157 (also includes PfamB 000210)
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk