Structural Classification of Proteins
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Superfamily: EF-G C-terminal domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: EF-G C-terminal domain-like [54980]
    link to SUPERFAMILY database - Superfamily

Families:

  1. EF-G/eEF-2 domains III and V [54981] (3)
    domain III structure is lacking some of the superfamily characters and is often disordered in crystals
    1. Elongation factor G (EF-G) [54982]
      domain III is seen in 1FNM but disordered in the most of other PDB entries
      1. Thermus thermophilus [TaxId: 274] [54983] (12)
        1. 2bv3 picpicxrefxrefxref
          automatically matched to d1fnma4
          complexed with gnp, mg; mutant
          1. region a:404-478 [129240] picpiclink
        2. 2bv3 picpicxrefxrefxref
          automatically matched to d1dar_4
          complexed with gnp, mg; mutant
          1. region a:600-688 [129241] picpiclink
        3. 2efg picpicxrefxrefxref
          complexed with gdp
          1. region a:600-689 [39301] picpiclink
        4. 2bm0 picpicxrefxrefxref
          automatically matched to d1fnma4
          complexed with gdp, mg; mutant
          1. region a:404-478 [128751] picpiclink
        5. 2bm0 picpicxrefxrefxref
          automatically matched to d1dar_4
          complexed with gdp, mg; mutant
          1. region a:600-689 [128752] picpiclink
        6. 1fnm picpicxrefxrefxref
          complexed with gdp, mg; mutant
          1. region a:404-482 [39302] picpiclink
          2. region a:600-688 [39303] picpiclink
        7. 1dar picpicxrefxrefxref
          complexed with gdp
          1. region a:600-689 [39300] picpiclink
        8. 2bm1 picpicxrefxrefxref
          automatically matched to d1fnma4
          complexed with gdp, mg; mutant
          1. region a:404-478 [128756] picpiclink
        9. 2bm1 picpicxrefxrefxref
          automatically matched to d1dar_4
          complexed with gdp, mg; mutant
          1. region a:600-688 [128757] picpiclink
        10. 1efg picpicxrefxrefxref
          complexed with gdp
          1. region a:600-689 [39305] picpiclink
        11. 1elo picpicxrefxrefxref
          1. region a:600-689 [39304] picpiclink
        12. 1ktv picpicxrefxrefxref
          1. region a:600-689 [91030] picpiclink
          2. region b:600-689 [91034] picpiclink
      2. Thermus thermophilus, EF-G-2 [TaxId: 274] [143371] (4)
        SQ Q5SI76 371-447! SQ Q5SI76 563-658
        TTHA1498
        1. 2dy1 picpicxrefxrefxref
          automatically matched to d1wdta5
          complexed with gtp, mg
          1. region a:378-454 [146610] picpiclink
        2. 2dy1 picpicxrefxrefxref
          automatically matched to d1wdta4
          complexed with gtp, mg
          1. region a:570-665 [146611] picpiclink
        3. 1wdt picpicxrefxrefxref
          complexed with gtp, mg
          1. region a:570-665 [120914] picpiclink
        4. 1wdt picpicxrefxrefxref
          complexed with gtp, mg
          1. region a:378-454 [120915] picpiclink
    2. Elongation factor 2 (eEF-2) [82677]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82678] (41)
        SQ P32324
        1. 1n0u picpicxrefxrefxref
          complexed with so1
          1. region a:482-560 [79760] picpiclink
          2. region a:726-842 [79761] picpiclink
        2. 1u2r picpicxrefxrefxref
          complexed with apr, dde, gdp, mg, so1
          1. region a:482-560 [107620] picpiclink
          2. region a:726-842 [107621] picpiclink
        3. 1n0v picpicxrefxrefxref
          1. region c:482-560 [79765] picpiclink
          2. region c:726-842 [79766] picpiclink
          3. region d:482-560 [79770] picpiclink
          4. region d:726-842 [79771] picpiclink
        4. 2npf picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with gdp, mou
          1. region a:482-560 [138435] picpiclink
        5. 2npf picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with gdp, mou
          1. region a:726-842 [138436] picpiclink
        6. 2npf picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with gdp, mou
          1. region b:482-560 [138440] picpiclink
        7. 2npf picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with gdp, mou
          1. region b:726-842 [138441] picpiclink
        8. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, p34
          1. region a:482-560 [125339] picpiclink
        9. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, p34
          1. region a:726-842 [125340] picpiclink
        10. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, p34
          1. region c:482-560 [125345] picpiclink
        11. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, p34
          1. region c:726-842 [125346] picpiclink
        12. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, p34
          1. region e:482-560 [125351] picpiclink
        13. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, p34
          1. region e:726-842 [125352] picpiclink
        14. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, tad
          1. region a:482-560 [125319] picpiclink
        15. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, tad
          1. region a:726-842 [125320] picpiclink
        16. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, tad
          1. region c:482-560 [125325] picpiclink
        17. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, tad
          1. region c:726-842 [125326] picpiclink
        18. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde, tad
          1. region e:482-560 [125331] picpiclink
        19. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde, tad
          1. region e:726-842 [125332] picpiclink
        20. 2e1r picpicxrefxrefxref
          automatically matched to d1n0ua4
          complexed with gdp, sod
          1. region a:482-560 [131969] picpiclink
        21. 2e1r picpicxrefxrefxref
          automatically matched to d1n0ua5
          complexed with gdp, sod
          1. region a:726-842 [131970] picpiclink
        22. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde
          1. region a:482-560 [125301] picpiclink
        23. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde
          1. region a:726-842 [125302] picpiclink
        24. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde
          1. region c:482-560 [125307] picpiclink
        25. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde
          1. region c:726-842 [125308] picpiclink
        26. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with dde
          1. region e:482-560 [125313] picpiclink
        27. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with dde
          1. region e:726-842 [125314] picpiclink
        28. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde
          1. region a:482-560 [125283] picpiclink
        29. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde
          1. region a:726-842 [125284] picpiclink
        30. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde
          1. region c:482-560 [125289] picpiclink
        31. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde
          1. region c:726-842 [125290] picpiclink
        32. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde
          1. region e:482-560 [125295] picpiclink
        33. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde
          1. region e:726-842 [125296] picpiclink
        34. 2p8z picpicxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde, gnp, so1
          1. region t:482-560 [139554] picpiclink
        35. 2p8z picpicxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde, gnp, so1
          1. region t:730-842 [139555] picpiclink
        36. 2p8x picpicxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde, gnp
          1. region t:482-560 [139544] picpiclink
        37. 2p8x picpicxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde, gnp
          1. region t:730-842 [139545] picpiclink
        38. 2p8y picpicxrefxrefxref
          automatically matched to d1n0ua4
          complexed with apr, dde, gdp, so1
          1. region t:482-560 [139549] picpiclink
        39. 2p8y picpicxrefxrefxref
          automatically matched to d1n0ua5
          complexed with apr, dde, gdp, so1
          1. region t:730-842 [139550] picpiclink
        40. 2p8w picpicxrefxrefxref
          automatically matched to d1n0ua4
          complexed with gnp
          1. region t:482-560 [139539] picpiclink
        41. 2p8w picpicxrefxrefxref
          automatically matched to d1n0ua5
          complexed with gnp
          1. region t:730-842 [139540] picpiclink
  2. YigZ C-terminal domain-like [102991] (2)
    similar to EF-G domain V; N-terminal domain shares structural similarity with the EF-G domain IV
    1. Hypothetical protein YigZ, C-terminal domain [102992]
      1. Escherichia coli [TaxId: 562] [102993] (1)
        1. 1vi7 picpicxref
          structural genomics
          1. region a:138-208 [100741] picpiclink
    2. Hypothetical protein TTHA1053, C-terminal domain [143372]
      1. Thermus thermophilus [TaxId: 274] [143373] (1)
        SQ Q5SJF5 125-191
        1. 2cve picpicxref
          complexed with tla
          1. region a:125-191 [130870] picpiclink
  3. Hypothetical protein AF0491, C-terminal domain [110976] (1)
    1. Hypothetical protein AF0491, C-terminal domain [110977]
      1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [110978] (2)
        SQ O29759
        1. 1t95 picpicxrefxref
          1. region a:162-234 [106707] picpiclink
        2. 1p9q picpicxrefxref
          Structural genomics target
          1. region c:162-234 [104095] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk