Structural Classification of Proteins

Superfamily: Bacterial exopeptidase dimerisation domain

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily: Bacterial exopeptidase dimerisation domain [55031]
uperfamily

Families:

Bacterial exopeptidase dimerisation domain [55032] (9)
1. Carboxypeptidase G2 [55033]
  dimerisation mode is similar to that of 1PSD domain
  1. Pseudomonas sp., strain rs-16 [TaxId: 306] [55034] (1)
    1. 1cg2
      complexed with zn
      1. region a:214-326 [39360]
      2. region b:214-326 [39361]
      3. region c:214-326 [39362]
      4. region d:214-326 [39363]
2. Peptidase T (tripeptidase) [75443]
  1. Salmonella typhimurium [TaxId: 90371] [75444] (1)
    1. 1fno
      complexed with mse, so4, zn2
      1. region a:208-320 [70145]
  2. Escherichia coli [TaxId: 562] [103002] (1)
    1. 1vix
      structural genomics
      complexed with so4, zn
      1. region a:208-320 [100778]
      2. region b:208-320 [100780]
3. Peptidase-like beta-alanine synthase [103003]
  1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [103004] (2)
    1. 1r3n
      complexed with bib, zn
      1. region a:248-363 [96946]
      2. region b:248-363 [96948]
      3. region c:248-363 [96950]
      4. region d:248-363 [96952]
      5. region e:248-363 [96954]
      6. region f:248-363 [96956]
      7. region g:248-363 [96958]
      8. region h:248-363 [96960]
    2. 1r43
      complexed with bib, dtt, trs, zn
      1. region a:248-363 [96970]
      2. region b:248-363 [96972]
4. Succinyl-diaminopimelate desuccinylase [103005]
  1. Neisseria meningitidis [TaxId: 487] [103006] (1)
    1. 1vgy
      structural genomics
      mutant
      1. region a:181-293 [100621]
      2. region b:181-293 [100623]
5. IAA-amino acid hydrolase [117979]
  apparently monomeric
  1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117980] (2)
    SQ P54970 37-428
    1. 1xmb
      structural genomics target
      1. region a:216-334 [115480]
    2. 2q43
      automatically matched to d1xmba2
      1. region a:195-313 [139822]
6. Aminopeptidase PepV [82685]
  contains insert sudbomain 205-292 mimicking the other half of the family-specific dimer
  1. Lactobacillus delbrueckii [TaxId: 1584] [82686] (1)
    1. 1lfw
      complexed with aep, zn
      1. region a:187-382 [77943]
7. Allantoate amidohydrolase AllC [143401]
  1. Escherichia coli [TaxId: 562] [143402] (4)
    SQ P77425 211-327
    1. 1z2l
      complexed with 1al, so4, zn
      1. region a:213-329 [124384]
    2. 1z2l
      automatically matched to 1Z2L A:213-329
      complexed with 1al, so4, zn
      1. region b:213-329 [124386]
    3. 2imo
      automatically matched to 1Z2L A:213-329
      1. region a:213-329 [137516]
    4. 2imo
      automatically matched to 1Z2L A:213-329
      1. region b:213-329 [137518]
8. Protein YxeP [143403]
  dimeric protein closely related to IAA-amino acid hydrolase
  1. Bacillus subtilis [TaxId: 1423] [143404] (2)
    SQ P54955 178-292
    1. 1ysj
      complexed with ni; mutant
      1. region a:178-292 [123976]
    2. 1ysj
      automatically matched to 1YSJ A:178-292
      complexed with ni; mutant
      1. region b:178-292 [123978]