Structural Classification of Proteins
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Superfamily: GHMP Kinase, C-terminal domain

common fold is elaborated with additional secondary structures
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: GHMP Kinase, C-terminal domain [55060]
    common fold is elaborated with additional secondary structures
    link to SUPERFAMILY database - Superfamily

Families:

  1. Galactokinase [103011] (3)
    1. Galactokinase [103012]
      1. Lactococcus lactis [TaxId: 1358] [103013] (1)
        1. 1pie picpicxref
          complexed with gal, po4
          1. region a:214-396 [94707] picpiclink
      2. Archaeon Pyrococcus furiosus [TaxId: 2261] [103014] (1)
        1. 1s4e picpicxref
          complexed with adp, gla, mg
          1. region a:181-351 [98478] picpiclink
          2. region b:181-349 [98480] picpiclink
          3. region c:181-350 [98482] picpiclink
          4. region d:181-352 [98484] picpiclink
          5. region e:181-352 [98486] picpiclink
          6. region f:181-352 [98488] picpiclink
          7. region g:184-347 [98490] picpiclink
          8. region h:181-350 [98492] picpiclink
          9. region i:181-352 [98494] picpiclink
      3. Human (Homo sapiens) [TaxId: 9606] [117981] (1)
        SQ P51570
        1. 1wuu picpicxref
          complexed with anp, gal, mg
          1. region a:217-392 [114901] picpiclink
          2. region b:217-392 [114903] picpiclink
          3. region c:217-392 [114905] picpiclink
          4. region d:217-392 [114907] picpiclink
  2. Homoserine kinase [55061] (1)
    1. Homoserine kinase [55062]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55063] (5)
        1. 1h72 picpicxref
          complexed with anp, hse, trs
          1. region c:168-300 [60713] picpiclink
        2. 1h73 picpicxref
          complexed with anp, thr
          1. region a:168-300 [60715] picpiclink
        3. 1h74 picpicxref
          complexed with adp, ile, mg, sap
          1. region a:168-300 [65692] picpiclink
          2. region b:168-300 [65694] picpiclink
          3. region c:168-300 [65696] picpiclink
          4. region d:168-300 [65698] picpiclink
        4. 1fwk picpicxref
          CASP4
          complexed with adp, mg
          1. region a:168-300 [39398] picpiclink
          2. region b:168-300 [39399] picpiclink
          3. region c:168-300 [39400] picpiclink
          4. region d:168-300 [39401] picpiclink
        5. 1fwl picpicxref
          1. region a:168-300 [39402] picpiclink
          2. region b:168-300 [39403] picpiclink
          3. region c:168-300 [39404] picpiclink
          4. region d:168-300 [39405] picpiclink
  3. Mevalonate kinase [75450] (2)
    1. Mevalonate kinase [75451]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [75452] (2)
        1. 1kkh picpicxref
          complexed with dio
          1. region a:181-317 [72646] picpiclink
        2. 1vis picpicxref
          structural genomics
          complexed with dox
          1. region a:181-313 [100770] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [75453] (2)
        1. 1kvk picpicxref
          complexed with atp, mg
          1. region a:226-394 [73061] picpiclink
        2. 2r42 picpicxref
          automatically matched to d1kvka2
          complexed with fps, mg
          1. region a:226-394 [151574] picpiclink
  4. Phosphomevalonate kinase (PMK) [75454] (1)
    1. Phosphomevalonate kinase (PMK) [75455]
      1. Streptococcus pneumoniae r6 [TaxId: 171101] [75456] (1)
        1. 1k47 picpicxref
          complexed with mse
          1. region a:195-329 [72041] picpiclink
          2. region b:195-329 [72043] picpiclink
          3. region c:195-329 [72045] picpiclink
          4. region d:195-329 [72047] picpiclink
          5. region e:195-329 [72049] picpiclink
          6. region f:195-329 [72051] picpiclink
  5. Mevalonate 5-diphosphate decarboxylase [64281] (1)
    1. Mevalonate 5-diphosphate decarboxylase [64282]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64283] (1)
        1. 1fi4 picpicxref
          mutant
          1. region a:191-393 [59848] picpiclink
  6. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89950] (2)
    1. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89951]
      1. Thermus thermophilus [TaxId: 274] [89952] (1)
        1. 1uek picpicxref
          1. region a:149-268 [88484] picpiclink
      2. Escherichia coli [TaxId: 562] [103015] (1)
        1. 1oj4 picpicxref
          complexed with anp, cdm, cl
          1. region a:164-283 [93084] picpiclink
          2. region b:164-283 [93086] picpiclink
  7. Early switch protein XOL-1 [89953] (1)
    lost the ATP-binding site
    1. Early switch protein XOL-1 [89954]
      primary determinant of sexual fate in C. elegans
      1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [89955] (1)
        1. 1mg7 picpicxref
          1. region a:188-380 [84955] picpiclink
          2. region b:188-380 [84957] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk