Structural Classification of Proteins
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Superfamily: GlnB-like

form timeric structures with the orthogonally packed beta-sheets
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: GlnB-like [54913]
    form timeric structures with the orthogonally packed beta-sheets
    link to SUPERFAMILY database - Superfamily

Families:

  1. Prokaryotic signal transducing protein [54914] (8)
    1. PII (product of glnB) [54915]
      trimer with orthogonal packing of beta-sheets around the threefold axis
      1. Escherichia coli [TaxId: 562] [54916] (2)
        1. 2pii picpic
          1. chain a [39071] picpiclink
        2. 1pil picpic
          1. chain a [39072] picpiclink
      2. Herbaspirillum seropedicae [TaxId: 964] [89930] (1)
        1. 1hwu picpic
          1. chain a [83633] picpiclink
          2. chain b [83634] picpiclink
          3. chain c [83635] picpiclink
          4. chain d [83636] picpiclink
          5. chain e [83637] picpiclink
          6. chain f [83638] picpiclink
      3. Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131] [102970] (1)
        1. 1qy7 picpic
          complexed with ni, so4; mutant
          1. chain a [96575] picpiclink
          2. chain b [96576] picpiclink
          3. chain c [96577] picpiclink
      4. Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId: 1131] [102971] (1)
        1. 1ul3 picpic
          complexed with ca, gol
          1. chain a [99534] picpiclink
          2. chain b [99535] picpiclink
          3. chain c [99536] picpiclink
          4. chain d [99537] picpiclink
      5. Thermus thermophilus [TaxId: 274] [102972] (5)
        SQ P83820
        1. 1vfj picpic
          structural genomics target
          mutant
          1. chain a [113637] picpiclink
          2. chain b [113638] picpiclink
          3. chain c [113639] picpiclink
        2. 1v3r picpic
          Structural genomics target
          mutant
          1. chain a [113500] picpiclink
          2. chain b [113501] picpiclink
          3. chain c [113502] picpiclink
        3. 1v3s picpic
          Structural genomics target
          complexed with atp; mutant
          1. chain a [113503] picpiclink
          2. chain b [113504] picpiclink
          3. chain c [113505] picpiclink
        4. 1v9o picpic
          structural genomics target
          complexed with adp; mutant
          1. chain a [113595] picpiclink
          2. chain b [113596] picpiclink
          3. chain c [113597] picpiclink
        5. 1ufl picpic
          structural genomics
          mutant
          1. chain a [99341] picpiclink
          2. chain b [99342] picpiclink
          3. chain c [99343] picpiclink
    2. PII-homolog GlnK [54917]
      1. Escherichia coli [TaxId: 562] [54918] (8)
        1. 1gnk picpic
          complexed with so4
          1. chain a [39073] picpiclink
          2. chain b [39074] picpiclink
        2. 2gnk picpic
          complexed with atp
          1. chain a [39075] picpiclink
        3. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region g:1-112 [138617] picpiclink
        4. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region h:1-112 [138618] picpiclink
        5. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region i:1-112 [138619] picpiclink
        6. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region j:1-112 [138620] picpiclink
        7. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region k:1-112 [138621] picpiclink
        8. 2nuu picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1gnka_
          complexed with adp
          1. region l:1-112 [138622] picpiclink
      2. Shigella flexneri [TaxId: 623] [160309] (1)
        SQ P0AC58 1-112
        1. 2ns1 picpicxref
          complexed with adp, bog, trs; mutant
          1. region b:1-112 [145694] picpiclink
    3. Hypothetical protein TTHA0516 [143281]
      1. Thermus thermophilus [TaxId: 274] [143282] (3)
        SQ Q5SKX7 1-100
        1. 2cz4 picpic
          complexed with act, cl
          1. region a:1-100 [131035] picpiclink
        2. 2cz4 picpic
          automatically matched to 2CZ4 A:1-100
          complexed with act, cl
          1. region b:1-100 [131036] picpiclink
        3. 2cz4 picpic
          automatically matched to 2CZ4 A:1-100
          complexed with act, cl
          1. region c:1-100 [131037] picpiclink
  2. Divalent ion tolerance proteins CutA (CutA1) [75434] (7)
    1. Cut A1 [89931]
      1. Thermus thermophilus [TaxId: 274] [89932] (2)
        1. 1nza picpic
          structural genomics
          complexed with cl, gol, na, so4
          1. chain a [86444] picpiclink
        2. 1v6h picpic
          structural genomics
          complexed with so4
          1. chain a [100380] picpiclink
          2. chain b [100381] picpiclink
          3. chain c [100382] picpiclink
      2. Escherichia coli [TaxId: 562] [102973] (1)
        1. 1naq picpic
          complexed with hg, mbo
          1. chain a [91761] picpiclink
          2. chain b [91762] picpiclink
          3. chain c [91763] picpiclink
          4. chain d [91764] picpiclink
          5. chain e [91765] picpiclink
          6. chain f [91766] picpiclink
      3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102974] (15)
        SQ O58720
        1. 1uku picpic
          complexed with cu
          1. chain a [99533] picpiclink
        2. 1umj picpic
          Structural genomics target
          complexed with gai
          1. chain a [113310] picpiclink
          2. chain b [113311] picpiclink
        3. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region a:1-102 [119879] picpiclink
        4. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region b:1-102 [119880] picpiclink
        5. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region c:1-102 [119881] picpiclink
        6. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region d:1-102 [119882] picpiclink
        7. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region e:1-102 [119883] picpiclink
        8. 1v99 picpic
          automatically matched to d1ukua_
          complexed with cl, cu, mes, so4
          1. region f:1-102 [119884] picpiclink
        9. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region a:1-102 [119887] picpiclink
        10. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region b:1-102 [119888] picpiclink
        11. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region c:1-102 [119889] picpiclink
        12. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region d:1-102 [119890] picpiclink
        13. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region e:1-102 [119891] picpiclink
        14. 1v9b picpic
          automatically matched to d1ukua_
          complexed with co, so4
          1. region f:1-102 [119892] picpiclink
        15. 1j2v picpic
          mutant
          1. chain a [90804] picpiclink
      4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89933] (1)
        1. 1p1l picpic
          structural genomics
          1. chain a [87695] picpiclink
    2. Hypothetical protein TM1056 [75435]
      1. Thermotoga maritima [TaxId: 2336] [75436] (3)
        1. 1kr4 picpic
          structural genomics
          complexed with mse
          1. chain a [72889] picpiclink
        2. 1vhf picpic
          structural genomics
          1. chain a [100671] picpiclink
        3. 1o5j picpic
          structural genomics
          1. chain a [92503] picpiclink
    3. Mammalian CutA-like protein [102975]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [102976] (1)
        1. 1osc picpic
          1. chain a [93490] picpiclink
          2. chain b [93491] picpiclink
          3. chain c [93492] picpiclink
          4. chain d [93493] picpiclink
          5. chain e [93494] picpiclink
          6. chain f [93495] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [117946] (7)
        SQ O60888 40-146
        1. 2zfh picpic
          automatically matched to d1xk8d_
          1. region a:63-169 [154408] picpiclink
        2. 2zfh picpic
          automatically matched to d1xk8d_
          1. region b:63-168 [154409] picpiclink
        3. 2zfh picpic
          automatically matched to d1xk8d_
          1. region c:63-168 [154410] picpiclink
        4. 2zfh picpic
          automatically matched to d1xk8d_
          1. region d:63-168 [154411] picpiclink
        5. 2zfh picpic
          automatically matched to d1xk8d_
          1. region e:63-168 [154412] picpiclink
        6. 2zfh picpic
          automatically matched to d1xk8d_
          1. region f:63-168 [154413] picpiclink
        7. 1xk8 picpic
          Structural genomics target
          complexed with na
          1. chain a [115402] picpiclink
          2. chain b [115403] picpiclink
          3. chain c [115404] picpiclink
          4. chain d [115405] picpiclink
          5. chain e [115406] picpiclink
          6. chain f [115407] picpiclink
  3. DUF190/COG1993 [89934] (1)
    1. Hypothetical protein TM0021 [89935]
      1. Thermotoga maritima [TaxId: 2336] [89936] (1)
        1. 1o51 picpic
          structural genomics
          complexed with adp, so4
          1. chain a [92480] picpiclink
  4. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [88851] (2)
    1. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [82669]
      binds allosteric inhibitor histidine
      1. Mycobacterium tuberculosis [TaxId: 1773] [82670] (2)
        1. 1nh8 picpicxref
          complexed with amp, his, so4
          1. region a:211-284 [80508] picpiclink
        2. 1nh7 picpicxref
          complexed with mo6, so4
          1. region a:211-284 [80506] picpiclink
      2. Escherichia coli [TaxId: 562] [102977] (2)
        1. 1h3d picpicxref
          complexed with amp, tla
          1. region a:225-299 [90593] picpiclink
        2. 1q1k picpicxref
          complexed with prt, tla
          1. region a:225-299 [95590] picpiclink
  5. RPA1041-like [160310] (1)
    PF09413; DUF2007; provisional superfamily assignment based on a single monomeric solution structure
    1. Hypothetical protein RPA1041 [160311]
      1. Rhodopseudomonas palustris [TaxId: 1076] [160312] (1)
        SQ Q6NAY9 1-75
        missannotated in PDB 2HFV as Pseudomonas aeruginosa
        1. 2hfv picpic
          1. region a:23-97 [147279] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk