Structural Classification of Proteins
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Superfamily: Transposase IS200-like

contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: Transposase IS200-like [143422]
    contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer
    link to SUPERFAMILY database - Superfamily

Families:

  1. Transposase IS200-like [143423] (3)
    Pfam 01797
    1. Putative transposase SSO1474 [143424]
      1. Archaeon Sulfolobus solfataricus [TaxId: 2287] [143425] (4)
        SQ Q97Y68 2-131
        1. 2f5g picpic
          automatically matched to 2F4F A:2-131
          1. region a:2-131 [132991] picpiclink
        2. 2f5g picpic
          automatically matched to 2F4F A:2-131
          1. region b:2-131 [132992] picpiclink
        3. 2f4f picpic
          complexed with mn
          1. region a:2-131 [132920] picpiclink
        4. 2f4f picpic
          automatically matched to 2F4F A:2-131
          complexed with mn
          1. region b:2-131 [132921] picpiclink
    2. ISHP608 transposase [143426]
      1. Helicobacter pylori [TaxId: 210] [143427] (14)
        SQ Q933Z0 4-133
        1. 2vjv picpic
          automatically matched to d2a6ma1
          complexed with mg
          1. region a:6-130 [153201] picpiclink
        2. 2vjv picpic
          automatically matched to d2a6ma1
          complexed with mg
          1. region b:6-130 [153202] picpiclink
        3. 2vju picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region a:6-131 [153199] picpiclink
        4. 2vju picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region b:6-131 [153200] picpiclink
        5. 2vih picpic
          automatically matched to d2a6ma1
          1. region a:6-131 [153168] picpiclink
        6. 2vih picpic
          automatically matched to d2a6ma1
          1. region b:6-131 [153169] picpiclink
        7. 2vic picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region a:6-131 [153166] picpiclink
        8. 2vic picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region b:6-131 [153167] picpiclink
        9. 2a6o picpic
          automatically matched to 2A6M A:4-133
          1. region a:4-133 [126291] picpiclink
        10. 2a6o picpic
          automatically matched to 2A6M A:4-133
          1. region b:4-133 [126292] picpiclink
        11. 2a6m picpic
          1. region a:4-133 [126287] picpiclink
        12. 2a6m picpic
          automatically matched to 2A6M A:4-133
          1. region b:4-133 [126288] picpiclink
        13. 2vhg picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region a:6-131 [153056] picpiclink
        14. 2vhg picpic
          automatically matched to d2a6ma1
          complexed with mn
          1. region b:6-131 [153057] picpiclink
    3. Putative transposase DR0177 [143428]
      1. Deinococcus radiodurans [TaxId: 1299] [143429] (2)
        SQ Q9RXX8 1-130
        1. 2fyx picpic
          complexed with gol
          1. region a:1-130 [134411] picpiclink
        2. 2fyx picpic
          automatically matched to 2FYX A:1-130
          complexed with gol
          1. region b:1-130 [134412] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk