Structural Classification of Proteins

Family: Nucleoside diphosphate kinase, NDK

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily: Nucleoside diphosphate kinase, NDK [54919]
uperfamily
Family: Nucleoside diphosphate kinase, NDK [54920]

Protein Domains:

Nucleoside diphosphate kinase, NDK [54921]
1. Human (Homo sapiens) [TaxId: 9606] [54922] (14)
  1. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region a:2-151 [155055]
  2. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region b:2-151 [155056]
  3. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region c:5-151 [155057]
  4. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region d:2-151 [155058]
  5. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region e:5-151 [155059]
  6. 3bbb
    automatically matched to d1nskl_
    complexed with da, dg
    1. region f:2-151 [155060]
  7. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region a:2-151 [155065]
  8. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region b:2-151 [155066]
  9. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region c:2-151 [155067]
  10. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region d:2-151 [155068]
  11. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region e:2-151 [155069]
  12. 3bbf
    automatically matched to d1nskl_
    complexed with dtt, gdp, mg
    1. region f:2-151 [155070]
  13. 1nue
    complexed with gdp, mg
    1. chain a [39076]
    2. chain b [39077]
    3. chain c [39078]
    4. chain d [39079]
    5. chain e [39080]
    6. chain f [39081]
  14. 1nsk
    CASP1
    1. chain r [39082]
    2. chain l [39083]
    3. chain t [39084]
    4. chain u [39085]
    5. chain n [39086]
    6. chain o [39087]
2. Human (Homo sapiens), NDK4 [TaxId: 9606] [54923] (1)
  1. 1ehw
    complexed with so4; mutant
    1. chain a [39088]
    2. chain b [39089]
3. Human (Homo sapiens), NDKA [TaxId: 9606] [75437] (5)
  1. 1ucn
    complexed with adp, ca, po4, trs; mutant
    1. chain a [99183]
    2. chain b [99184]
    3. chain c [99185]
  2. 1jxv
    1. chain a [71932]
    2. chain b [71933]
    3. chain c [71934]
    4. chain d [71935]
    5. chain e [71936]
    6. chain f [71937]
  3. 2hvd
    automatically matched to d1jxva_
    complexed with adp
    1. region a:4-152 [136801]
  4. 2hvd
    automatically matched to d1jxva_
    complexed with adp
    1. region b:4-152 [136802]
  5. 2hvd
    automatically matched to d1jxva_
    complexed with adp
    1. region c:4-152 [136803]
4. Cow (Bos taurus) [TaxId: 9913] [54924] (2)
  1. 1be4
    complexed with pcg
    1. chain a [39090]
    2. chain b [39091]
    3. chain c [39092]
  2. 1bhn
    complexed with 35g, gdp
    1. chain a [39093]
    2. chain b [39094]
    3. chain c [39095]
    4. chain d [39096]
    5. chain e [39097]
    6. chain f [39098]
5. Dictyostelium discoideum [TaxId: 44689] [54925] (27)
  1. 1hlw
    mutant
    1. chain a [39100]
  2. 1ndc
    complexed with mg, tyd
    1. chain a [39104]
  3. 1npk
    1. chain a [39099]
  4. 1f3f
    complexed with d4d, d4t, mg, po4; mutant
    1. chain a [39101]
    2. chain b [39102]
    3. chain c [39103]
  5. 1kdn
    complexed with adp, af3, mg
    1. chain a [39105]
    2. chain b [39106]
    3. chain c [39107]
  6. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region a:6-155 [118868]
  7. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region b:6-155 [118869]
  8. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region c:6-155 [118870]
  9. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region d:6-155 [118871]
  10. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region e:6-155 [118872]
  11. 1s5z
    automatically matched to d1f6tb_
    complexed with po4, son
    1. region f:6-155 [118873]
  12. 1ncl
    mutant
    1. chain a [39109]
  13. 1nsp
    complexed with phs
    1. chain a [39108]
  14. 1f6t
    complexed with mg, tbd
    1. chain a [39110]
    2. chain b [39111]
    3. chain c [39112]
  15. 1hhq
    complexed with so4; mutant
    1. chain a [61044]
  16. 1ndp
    complexed with adp, mg
    1. chain a [39113]
    2. chain b [39114]
  17. 2bef
    complexed with adp, bef, mg
    1. chain a [39115]
    2. chain b [39116]
    3. chain c [39117]
  18. 1mn7
    complexed with abt, mg; mutant
    1. chain a [79316]
    2. chain b [79317]
  19. 1lwx
    complexed with azd, mg; mutant
    1. chain a [39119]
    2. chain b [39120]
    3. chain c [39121]
  20. 1ndk
    mutant
    1. chain a [39118]
  21. 1b4s
    complexed with adp, mg, po4; mutant
    1. chain a [39122]
    2. chain b [39123]
    3. chain c [39124]
  22. 1leo
    mutant
    1. chain a [39125]
  23. 1b99
    complexed with fup, pop
    1. chain a [39126]
    2. chain b [39127]
    3. chain c [39128]
    4. chain d [39129]
    5. chain e [39130]
    6. chain f [39131]
  24. 1mn9
    complexed with mg, rtp; mutant
    1. chain a [85025]
    2. chain b [85026]
    3. chain c [85027]
  25. 1hiy
    complexed with 3an
    1. chain a [61068]
    2. chain b [61069]
    3. chain c [61070]
  26. 1pae
    complexed with cse, se; mutant
    1. chain x [94412]
  27. 1bux
    complexed with pps
    1. chain a [39132]
    2. chain b [39133]
    3. chain c [39134]
6. Drosophila melanogaster [TaxId: 7227] [54926] (2)
  1. 1nsq
    complexed with phs
    1. chain a [39135]
    2. chain b [39136]
    3. chain c [39137]
  2. 1ndl
    1. chain a [39138]
    2. chain b [39139]
    3. chain c [39140]
7. Myxococcus xanthus [TaxId: 34] [54927] (3)
  1. 1nhk
    complexed with cmp
    1. chain r [39141]
    2. chain l [39142]
  2. 2nck
    1. chain r [39143]
    2. chain l [39144]
  3. 1nlk
    complexed with adp, mg
    1. chain r [39145]
    2. chain l [39146]
8. Mycobacterium tuberculosis [TaxId: 1773] [75438] (1)
  1. 1k44
    1. chain a [72033]
    2. chain b [72034]
    3. chain c [72035]
    4. chain d [72036]
    5. chain e [72037]
    6. chain f [72038]
9. Bacillus halodenitrificans [TaxId: 1482] [89937] (1)
  1. 1nb2
    1. chain a [85508]
10. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117947] (1)
  SQ Q8ID43
  1. 1xiq
    1. chain a [115361]
    2. chain b [115362]
    3. chain c [115363]
    4. chain d [115364]
    5. chain e [115365]
    6. chain f [115366]
11. Pea (Pisum sativum) [TaxId: 3888] [117948] (1)
  SQ Q9SP13 81-231
  1. 1w7w
    mutant
    1. chain a [114327]
    2. chain b [114328]
    3. chain c [114329]
    4. chain d [114330]
    5. chain e [114331]
    6. chain f [114332]
12. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117949] (1)
  SQ P39207
  1. 1u8w
    1. chain a [113204]
    2. chain b [113205]
    3. chain c [113206]
    4. chain d [113207]
    5. chain e [113208]
    6. chain f [113209]
13. Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702] [117950] (2)
  SQ O64903 79-231
  1. 1s57
    complexed with epe, so4
    1. chain a [112028]
    2. chain b [112029]
    3. chain c [112030]
    4. chain d [112031]
    5. chain e [112032]
    6. chain f [112033]
  2. 1s59
    complexed with dgi, dgt
    1. chain a [112034]
    2. chain b [112035]
    3. chain c [112036]
    4. chain d [112037]
    5. chain e [112038]
    6. chain f [112039]
14. Human(Homo sapiens), NDK3 [TaxId: 9606] [143283] (3)
  SQ Q13232 18-169
  1. 1zs6
    complexed with adp
    1. region a:18-169 [125590]
  2. 1zs6
    automatically matched to 1ZS6 A:18-169
    complexed with adp
    1. region b:18-169 [125591]
  3. 1zs6
    automatically matched to 1ZS6 A:18-169
    complexed with adp
    1. region d:18-169 [125592]
15. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143284] (12)
  SQ O58429 3-155
  1. 2dya
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
    1. region a:6-158 [131895]
  2. 2dya
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
    1. region b:6-158 [131896]
  3. 2dxe
    automatically matched to 2CWK A:6-158
    complexed with cl, gdp, mg
    1. region a:6-158 [131870]
  4. 2dxe
    automatically matched to 2CWK A:6-158
    complexed with cl, gdp, mg
    1. region b:6-158 [131871]
  5. 2dxd
    automatically matched to 2CWK A:6-158
    complexed with anp, cl
    1. region a:6-158 [131868]
  6. 2dxd
    automatically matched to 2CWK A:6-158
    complexed with anp, cl
    1. region b:6-158 [131869]
  7. 2dxf
    automatically matched to 2CWK A:6-158
    complexed with cl, gnp
    1. region a:6-158 [131872]
  8. 2dxf
    automatically matched to 2CWK A:6-158
    complexed with cl, gnp
    1. region b:6-158 [131873]
  9. 2cwk
    1. region a:6-158 [130925]
  10. 2cwk
    automatically matched to 2CWK A:6-158
    1. region b:6-157 [130926]
  11. 2dy9
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
    1. region a:6-158 [131893]
  12. 2dy9
    automatically matched to 2CWK A:6-158
    complexed with adp, cl, mg
    1. region b:6-158 [131894]
16. Rice(Oryza sativa) [TaxId: 4530] [143285] (12)
  SQ Q07661 1-148
  1. 1pku
    1. region a:4-151 [118718]
  2. 1pku
    automatically matched to 1PKU A:4-151
    1. region b:4-151 [118719]
  3. 1pku
    automatically matched to 1PKU A:4-151
    1. region c:4-151 [118720]
  4. 1pku
    automatically matched to 1PKU A:4-151
    1. region d:4-151 [118721]
  5. 1pku
    automatically matched to 1PKU A:4-151
    1. region e:4-151 [118722]
  6. 1pku
    automatically matched to 1PKU A:4-151
    1. region f:4-151 [118723]
  7. 1pku
    automatically matched to 1PKU A:4-151
    1. region g:4-151 [118724]
  8. 1pku
    automatically matched to 1PKU A:4-151
    1. region h:4-151 [118725]
  9. 1pku
    automatically matched to 1PKU A:4-151
    1. region i:4-151 [118726]
  10. 1pku
    automatically matched to 1PKU A:4-151
    1. region j:4-151 [118727]
  11. 1pku
    automatically matched to 1PKU A:4-151
    1. region k:4-151 [118728]
  12. 1pku
    automatically matched to 1PKU A:4-151
    1. region l:4-151 [118729]
17. Mimivirus [TaxId: 315393] [143286] (8)
  SQ Q5UQL3 2-137
  1. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region a:2-129 [128103]
  2. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region b:2-129 [128104]
  3. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region c:2-129 [128105]
  4. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region d:2-129 [128106]
  5. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region e:2-129 [128107]
  6. 2b8q
    automatically matched to 2B8P A:2-129
    complexed with mg, po4, tyd
    1. region f:2-129 [128108]
  7. 2b8p
    complexed with so4
    1. region a:2-129 [128101]
  8. 2b8p
    automatically matched to 2B8P A:2-129
    complexed with so4
    1. region b:2-129 [128102]
18. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [143287] (3)
  SQ Q8ZWY4 2-183
  1. 1xqi
    complexed with pge, trs; mutant
    1. region a:14-195 [122237]
  2. 1xqi
    automatically matched to 1XQI A:14-195
    complexed with pge, trs; mutant
    1. region b:14-195 [122238]
  3. 1xqi
    automatically matched to 1XQI A:14-195
    complexed with pge, trs; mutant
    1. region c:14-195 [122239]
19. Archaeon Halobacterium salinarum [TaxId: 2242] [143288] (15)
  SQ P61136 4-158
  1. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region a:4-155 [127588]
  2. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region b:5-155 [127589]
  3. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region c:4-156 [127590]
  4. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region d:4-155 [127591]
  5. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region e:4-155 [127592]
  6. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region f:4-155 [127593]
  7. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region g:4-155 [127594]
  8. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region h:4-155 [127595]
  9. 2az3
    automatically matched to 2AZ1 A:4-158
    complexed with cdp, mg
    1. region i:5-155 [127596]
  10. 2az1
    complexed with ca
    1. region a:4-158 [127580]
  11. 2az1
    automatically matched to 2AZ1 A:4-158
    complexed with ca
    1. region b:4-158 [127581]
  12. 2az1
    automatically matched to 2AZ1 A:4-158
    complexed with ca
    1. region c:4-158 [127582]
  13. 2az1
    automatically matched to 2AZ1 A:4-158
    complexed with ca
    1. region d:4-158 [127583]
  14. 2az1
    automatically matched to 2AZ1 A:4-158
    complexed with ca
    1. region e:5-158 [127584]
  15. 2az1
    automatically matched to 2AZ1 A:4-158
    complexed with ca
    1. region f:4-158 [127585]
20. Thermus thermophilus [TaxId: 274] [143289] (6)
  SQ Q5SLV5 1-137
  1. 1wkj
    1. region a:1-137 [120983]
  2. 1wkj
    automatically matched to 1WKJ A:1-137
    1. region b:1-137 [120984]
  3. 1wkl
    automatically matched to 1WKJ A:1-137
    complexed with adp, atp, mg, phs
    1. region a:1-137 [120987]
  4. 1wkl
    automatically matched to 1WKJ A:1-137
    complexed with adp, atp, mg, phs
    1. region b:1-137 [120988]
  5. 1wkk
    automatically matched to 1WKJ A:1-137
    complexed with gdp
    1. region a:1-137 [120985]
  6. 1wkk
    automatically matched to 1WKJ A:1-137
    complexed with gdp
    1. region b:1-137 [120986]