Structural Classification of Proteins
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Superfamily: RNA-binding domain, RBD

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: RNA-binding domain, RBD [54928]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Canonical RBD [54929] (71)
    1. Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930]
      duplication: contains two domains of this fold
      1. Human (Homo sapiens) [TaxId: 9606] [54931] (14)
        SQ P09651 7-188
        1. 1l3k picpic
          1. region a:8-91 [73539] picpiclink
          2. region a:103-181 [73540] picpiclink
        2. 1u1q picpic
          complexed with di
          1. chain a [107598] picpiclink
        3. 1up1 picpic
          1. region a:7-92 [39149] picpiclink
          2. region a:99-182 [39150] picpiclink
        4. 1u1r picpic
          complexed with 2pr
          1. chain a [107599] picpiclink
        5. 1u1p picpic
          complexed with 2pr
          1. chain a [107597] picpiclink
        6. 1ha1 picpic
          1. region a:8-92 [39147] picpiclink
          2. region a:99-180 [39148] picpiclink
        7. 2up1 picpic
          protein/DNA complex
          1. region a:8-98 [39151] picpiclink
          2. region a:99-190 [39152] picpiclink
        8. 1u1o picpic
          complexed with di
          1. chain a [107596] picpiclink
        9. 1u1n picpic
          complexed with prn
          1. chain a [107595] picpiclink
        10. 1u1k picpic
          complexed with 7da
          1. chain a [107592] picpiclink
        11. 1u1l picpic
          complexed with prn
          1. chain a [107593] picpiclink
        12. 1u1m picpic
          complexed with 7gu
          1. chain a [107594] picpiclink
        13. 1po6 picpic
          complexed with 6mi
          1. region a:8-98 [94964] picpiclink
          2. region a:99-190 [94965] picpiclink
        14. 1pgz picpic
          complexed with 6mi
          1. region a:8-98 [94697] picpiclink
          2. region a:99-190 [94698] picpiclink
    2. Nuclear ribonucleoprotein D0 (AUF1) [75439]
      1. Human (Homo sapiens) [TaxId: 9606] [75440] (3)
        1. 1x0f picpic
          automatically matched to d1iqta_
          1. region a:183-257 [121546] picpiclink
        2. 1iqt picpic
          domain 1
          1. chain a [71279] picpiclink
        3. 1wtb picpic
          automatically matched to d1iqta_
          1. region a:183-257 [121256] picpiclink
    3. Splicesomal U1A protein [54932]
      duplication: contains two domains of this fold
      1. Human (Homo sapiens) [TaxId: 9606] [54933] (38)
        SQ P09012 1-97 ! SQ P09012 4-98 ! SQ P09012 1-98
        1. 1nu4 picpic
          contains a pre-organized C-terminal helix
          complexed with mg, mla; mutant
          1. chain a [80731] picpiclink
          2. chain b [80732] picpiclink
        2. 1urn picpic
          domain 1
          protein/RNA complex; complexed with cl, gol; mutant
          1. chain a [39153] picpiclink
          2. chain b [39154] picpiclink
          3. chain c [39155] picpiclink
        3. 1m5o picpic
          domain 1, complex with a ribozyme
          complexed with avc, ca; mutant
          1. chain c [78654] picpiclink
          2. chain f [78655] picpiclink
        4. 1sj3 picpic
          complexed with mg; mutant
          1. chain p [105601] picpiclink
        5. 1cx0 picpic
          domain 1, complex with a hepatitis delta virus ribozyme
          complexed with mg; mutant
          1. chain a [39158] picpiclink
        6. 1oia picpic
          1. chain a [87051] picpiclink
          2. chain b [87052] picpiclink
        7. 1m5v picpic
          domain 1, complex with a ribozyme
          complexed with a23, ca, mpd; mutant
          1. chain c [78662] picpiclink
          2. chain f [78663] picpiclink
        8. 1vc7 picpic
          complexed with sr; mutant
          1. chain a [108497] picpiclink
        9. 1drz picpic
          domain 1, complex with a hepatitis delta virus ribozyme
          complexed with mg, so4; mutant
          1. chain a [39159] picpiclink
        10. 1m5k picpic
          domain 1, complex with a hairpin ribozyme
          complexed with ca, ch3, cl, gtp, ido; mutant
          1. chain c [74509] picpiclink
          2. chain f [74510] picpiclink
        11. 1vc0 picpic
          complexed with sr; mutant
          1. chain a [108492] picpiclink
        12. 2nz4 picpic
          automatically matched to d1auda_
          complexed with a2m, glp, gtp, mg; mutant
          1. region a:7-96 [138833] picpiclink
        13. 2nz4 picpic
          automatically matched to d1auda_
          complexed with a2m, glp, gtp, mg; mutant
          1. region b:7-96 [138834] picpiclink
        14. 2nz4 picpic
          automatically matched to d1auda_
          complexed with a2m, glp, gtp, mg; mutant
          1. region c:8-96 [138835] picpiclink
        15. 2nz4 picpic
          automatically matched to d1auda_
          complexed with a2m, glp, gtp, mg; mutant
          1. region d:7-96 [138836] picpiclink
        16. 1sj4 picpic
          mutant
          1. chain p [105602] picpiclink
        17. 1vbx picpic
          mutant
          1. chain a [108489] picpiclink
        18. 2oih picpic
          automatically matched to d1auda_
          complexed with tl; mutant
          1. region a:4-98 [139100] picpiclink
        19. 1m5p picpic
          domain 1, complex with a ribozyme
          complexed with 5cg, ca; mutant
          1. chain c [78656] picpiclink
          2. chain f [78657] picpiclink
        20. 1sjf picpic
          complexed with nco; mutant
          1. chain a [105646] picpiclink
        21. 1vby picpic
          complexed with mn, na; mutant
          1. chain a [108490] picpiclink
        22. 1vc6 picpic
          complexed with mg; mutant
          1. chain a [108496] picpiclink
        23. 1vbz picpic
          complexed with ba; mutant
          1. chain a [108491] picpiclink
        24. 2oj3 picpic
          automatically matched to d1auda_
          complexed with nco, tl; mutant
          1. region a:4-98 [139101] picpiclink
        25. 3cul picpic
          automatically matched to d1auda_
          complexed with gtp, k, mg; mutant
          1. region a:301-392 [156993] picpiclink
        26. 3cul picpic
          automatically matched to d1auda_
          complexed with gtp, k, mg; mutant
          1. region b:401-491 [156994] picpiclink
        27. 3cun picpic
          automatically matched to d1auda_
          complexed with co, gtp, k, mg; mutant
          1. region a:302-392 [156997] picpiclink
        28. 3cun picpic
          automatically matched to d1auda_
          complexed with co, gtp, k, mg; mutant
          1. region b:401-491 [156998] picpiclink
        29. 3bo4 picpic
          automatically matched to d1auda_
          complexed with a23, gtp, k, mg
          1. region a:6-97 [155441] picpiclink
        30. 1u6b picpic
          complexed with 5mu, a23, gtp, k, mg; mutant
          1. chain a [107703] picpiclink
        31. 3bo3 picpic
          automatically matched to d1auda_
          complexed with a23, gtp, k, mg
          1. region a:6-97 [155440] picpiclink
        32. 3bo2 picpic
          automatically matched to d1auda_
          complexed with a23, gtp, mg
          1. region a:6-97 [155439] picpiclink
        33. 1zzn picpic
          automatically matched to d1auda_
          complexed with 5mu, a23, gtp, k, mg; mutant
          1. region a:4-98 [125912] picpiclink
        34. 1vc5 picpic
          complexed with na; mutant
          1. chain a [108495] picpiclink
        35. 1aud picpic
          protein/RNA complex; mutant
          1. chain a [39156] picpiclink
        36. 1dz5 picpic
          domain 1
          protein/RNA complex; mutant
          1. chain a [39162] picpiclink
          2. chain b [39163] picpiclink
        37. 1fht picpic
          domain 1
          1. chain a [39157] picpiclink
        38. 2u1a picpic
          domain 2
          mutant
          1. chain a [39164] picpiclink
      2. Drosophila melanogaster [TaxId: 7227] [160313] (3)
        SQ P43332 1-104! SQ P43332 134-216
        1. 2b0g picpic
          2nd RBD
          1. region a:1-83 [146085] picpiclink
        2. 2aym picpic
          2nd RBD
          1. region a:1-83 [146084] picpiclink
        3. 2k3k picpic
          1st RBD
          1. region a:1-104 [148266] picpiclink
    4. Splicing factor U2B'' [54934]
      1. Human (Homo sapiens) [TaxId: 9606] [54935] (1)
        1. 1a9n picpicxref
          protein/RNA complex; mutant
          1. chain b [39165] picpiclink
          2. chain d [39166] picpiclink
    5. Splicing factor U2AF 65 KDa subunit [54936]
      1. Human (Homo sapiens) [TaxId: 9606] [54937] (4)
        1. 2u2f picpic
          second RNA-binding domain
          1. chain a [39167] picpiclink
        2. 1o0p picpic
          third RNA-binding domain; complexed with an N-terminal Sf1/Mbbp peptide, chain B
          1. chain a [86535] picpiclink
        3. 1opi picpic
          third RNA-binding domain; complexed with an N-terminal Sf1/Mbbp peptide, chain B
          1. chain a [93406] picpiclink
        4. 1u2f picpic
          first RNA-binding domain
          1. chain a [39168] picpiclink
    6. Sex-lethal protein [54938]
      1. Drosophila melanogaster [TaxId: 7227] [54939] (4)
        1. 1b7f picpic
          protein/RNA complex; mutant
          1. region a:123-204 [39169] picpiclink
          2. region a:205-289 [39170] picpiclink
          3. region b:123-204 [39171] picpiclink
          4. region b:205-289 [39172] picpiclink
        2. 3sxl picpic
          1. region a:124-203 [39173] picpiclink
          2. region a:206-289 [39174] picpiclink
          3. region b:124-203 [39175] picpiclink
          4. region b:206-289 [39176] picpiclink
          5. region c:124-203 [39177] picpiclink
          6. region c:206-289 [39178] picpiclink
        3. 2sxl picpic
          first RBD
          mutant
          1. chain a [39179] picpiclink
        4. 1sxl picpic
          second RNA-binding domain
          1. chain a [39180] picpiclink
    7. Hu antigen C (Huc) [54940]
      1. Mouse (Mus musculus) [TaxId: 10090] [54941] (3)
        1. 1fnx picpic
          1. region h:35-120 [83253] picpiclink
          2. region h:121-208 [83254] picpiclink
        2. 1d8z picpic
          the first RNA-binding domain (RBD1)
          1. chain a [39181] picpiclink
        3. 1d9a picpic
          the second RNA-binding domain (RBD2)
          1. chain a [39182] picpiclink
    8. Hu antigen D (Hud) [54942]
      1. Human (Homo sapiens) [TaxId: 9606] [54943] (2)
        1. 1fxl picpic
          protein/RNA complex
          1. region a:37-118 [39183] picpiclink
          2. region a:119-203 [39184] picpiclink
        2. 1g2e picpic
          protein/RNA complex
          1. region a:37-118 [39185] picpiclink
          2. region a:119-203 [39186] picpiclink
    9. Heterogeneous nuclear ribonucleoprotein d0 [54944]
      1. Human (Homo sapiens) [TaxId: 9606] [54945] (2)
        1. 1hd1 picpic
          RBD1
          1. chain a [39187] picpiclink
        2. 1hd0 picpic
          RBD1
          1. chain a [39188] picpiclink
    10. Neural RNA-binding protein Musashi-1 [54946]
      1. Mouse (Mus musculus) [TaxId: 10090] [54947] (2)
        1. 2mst picpic
          RBD2
          1. chain a [39189] picpiclink
        2. 2mss picpic
          RBD2
          1. chain a [39190] picpiclink
    11. Poly(A)-binding protein [54948]
      1. Human (Homo sapiens) [TaxId: 9606] [54949] (1)
        1. 1cvj picpic
          protein/RNA complex
          1. region a:11-90 [39191] picpiclink
          2. region a:91-179 [39192] picpiclink
          3. region b:11-90 [39193] picpiclink
          4. region b:91-175 [39194] picpiclink
          5. region c:11-90 [39195] picpiclink
          6. region c:91-178 [39196] picpiclink
          7. region d:11-90 [39197] picpiclink
          8. region d:91-175 [39198] picpiclink
          9. region e:11-90 [39199] picpiclink
          10. region e:91-178 [39200] picpiclink
          11. region f:11-90 [39201] picpiclink
          12. region f:91-173 [39202] picpiclink
          13. region g:11-90 [39203] picpiclink
          14. region g:91-175 [39204] picpiclink
          15. region h:11-90 [39205] picpiclink
          16. region h:91-175 [39206] picpiclink
    12. Polypyrimidine tract-binding protein [54950]
      1. Human (Homo sapiens) [TaxId: 9606] [54951] (9)
        SQ P26599 54-141, 177-284, 335-531
        1. 2adc picpic
          automatically matched to d1qm9a1
          1. region a:335-443 [126582] picpiclink
        2. 2adc picpic
          automatically matched to d1qm9a2
          1. region a:444-531 [126583] picpiclink
        3. 2ad9 picpic
          1. region a:49-146 [126580] picpiclink
        4. 2adb picpic
          automatically matched to d1sjra_
          1. region a:177-284 [126581] picpiclink
        5. 2evz picpic
          automatically matched to d1qm9a1
          1. region a:12-120 [132443] picpiclink
        6. 2evz picpic
          automatically matched to d1qm9a2
          1. region a:121-208 [132444] picpiclink
        7. 1sjr picpic
          RR2
          1. chain a [105661] picpiclink
        8. 1sjq picpic
          RR1
          1. chain a [105660] picpiclink
        9. 1qm9 picpic
          RR3-RR4 tandem; representative structure
          1. region a:1-110 [39207] picpiclink
          2. region a:111-198 [39208] picpiclink
    13. Nucleolin [54952]
      1. Golden hamster (Mesocricetus auratus) [TaxId: 10036] [54953] (4)
        1. 1fjc picpic
          RBD2
          1. chain a [39212] picpiclink
        2. 1fje picpic
          protein/RNA complex
          1. region b:1-91 [39210] picpiclink
          2. region b:92-175 [39211] picpiclink
        3. 1fj7 picpic
          RBD1
          1. chain a [39209] picpiclink
        4. 1rkj picpic
          1. region a:1-91 [97613] picpiclink
          2. region a:92-175 [97614] picpiclink
    14. CBP20, 20KDa nuclear cap-binding protein [64274]
      1. Human (Homo sapiens) [TaxId: 9606] [64275] (6)
        1. 1h6k picpicxref
          mutant
          1. chain x [60684] picpiclink
          2. chain y [60685] picpiclink
          3. chain z [60686] picpiclink
        2. 1h2v picpicxref
          mutant
          1. chain z [76595] picpiclink
        3. 1h2t picpicxref
          complexed with 7mg, gdp; mutant
          1. chain z [76583] picpiclink
        4. 1n52 picpicxref
          complexed with gol, gtg, mg, pg4
          1. chain b [80002] picpiclink
        5. 1h2u picpicxref
          complexed with 7mg, gdp; mutant
          1. chain x [76590] picpiclink
          2. chain y [76591] picpiclink
        6. 1n54 picpicxref
          complexed with gol
          1. chain b [80006] picpiclink
    15. RNA-binding protein 8 [89938]
      1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [89939] (3)
        CG8781 protein
        1. 1rk8 picpicxrefxref
          complexed with ca
          1. chain a [97603] picpiclink
        2. 1oo0 picpicxref
          complexed with bme, gol, mpd, sr
          1. chain b [87183] picpiclink
        3. 1hl6 picpicxref
          1. chain a [83609] picpiclink
          2. chain c [83611] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [102978] (6)
        RBM8A, Y14
        1. 2j0s picpicxrefxrefxref
          automatically matched to d1p27b_
          complexed with anp, mg
          1. region d:66-154 [137916] picpiclink
        2. 2hyi picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p27b_
          complexed with anp, mg; mutant
          1. region b:64-154 [136891] picpiclink
        3. 2hyi picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p27b_
          complexed with anp, mg; mutant
          1. region h:64-154 [136895] picpiclink
        4. 1p27 picpicxref
          1. chain b [93908] picpiclink
          2. chain d [93910] picpiclink
        5. 2j0q picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p27b_
          complexed with anp, mg
          1. region d:66-154 [137909] picpiclink
        6. 2j0q picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1p27b_
          complexed with anp, mg
          1. region g:66-154 [137911] picpiclink
    16. Lupus LA protein [89940]
      1. Human (Homo sapiens) [TaxId: 9606] [89941] (13)
        1. 1zh5 picpicxrefxref
          automatically matched to d1s79a_
          complexed with so4
          1. region a:105-189 [125074] picpiclink
        2. 1zh5 picpicxrefxref
          automatically matched to d1s79a_
          complexed with so4
          1. region b:105-189 [125076] picpiclink
        3. 2voo picpicxrefxref
          automatically matched to d1s79a_
          1. region a:105-188 [153374] picpiclink
        4. 2voo picpicxrefxref
          automatically matched to d1s79a_
          1. region b:105-185 [153376] picpiclink
        5. 2vod picpicxrefxref
          automatically matched to d1s79a_
          1. region a:105-192 [153366] picpiclink
        6. 2vod picpicxrefxref
          automatically matched to d1s79a_
          1. region b:105-192 [153368] picpiclink
        7. 2von picpicxrefxref
          automatically matched to d1s79a_
          1. region a:105-192 [153370] picpiclink
        8. 2von picpicxrefxref
          automatically matched to d1s79a_
          1. region b:105-192 [153372] picpiclink
        9. 1yty picpicxrefxref
          automatically matched to d1s79a_
          1. region a:105-189 [124019] picpiclink
        10. 1yty picpicxrefxref
          automatically matched to d1s79a_
          1. region b:105-189 [124021] picpiclink
        11. 2vop picpicxref
          automatically matched to d1s79a_
          complexed with so4
          1. region a:105-191 [153378] picpiclink
        12. 1s79 picpic
          central RBD
          1. chain a [98632] picpiclink
        13. 1owx picpic
          C-terminal RBD
          1. chain a [87494] picpiclink
    17. Nuclear factor Aly [102979]
      1. Mouse (Mus musculus) [TaxId: 10090] [102980] (1)
        1. 1no8 picpic
          1. chain a [92018] picpiclink
    18. Musashi-1 [102981]
      1. Mouse (Mus musculus) [TaxId: 10090] [102982] (1)
        1. 1uaw picpic
          1. chain a [99139] picpiclink
    19. Cleavage stimulation factor, 64 kda subunit [102983]
      1. Human (Homo sapiens) [TaxId: 9606] [102984] (1)
        1. 1p1t picpic
          N-terminal RBD
          1. chain a [93899] picpiclink
    20. Synaptojanin 2 [102985]
      1. Human (Homo sapiens) [TaxId: 9606] [102986] (1)
        1. 1ufw picpic
          structural genomics
          1. chain a [99358] picpiclink
    21. Heterogeneous nuclear ribonucleoprotein L-like [117951]
      1. Mouse (Mus musculus) [TaxId: 10090] [117952] (1)
        SQ Q921F4 116-207
        1. 1wex picpic
          Structural genomics target
          1. chain a [114568] picpiclink
    22. Calcipressin-1 [117953]
      1. Mouse (Mus musculus) [TaxId: 10090] [117954] (1)
        SQ Q9JHG6 14-103
        1. 1wey picpic
          Structural genomics target; splicing variant
          1. chain a [114569] picpiclink
    23. Heterogeneous nuclear ribonucleoprotein H' [117955]
      1. Human (Homo sapiens) [TaxId: 9606] [117956] (2)
        SQ P55795 103-193; 280-369
        1. 1wg5 picpic
          Structural genomics target; 1st RBD
          1. chain a [114602] picpiclink
        2. 1wez picpic
          Structural genomics target; 2nd RBD
          1. chain a [114570] picpiclink
    24. TAR DNA-binding protein 43, TDP-43 [117957]
      1. Human (Homo sapiens) [TaxId: 9606] [117958] (2)
        SQ Q13148 193-267
        1. 2cqg picpic
          1. region a:96-185 [130722] picpiclink
        2. 1wf0 picpic
          Structural genomics target
          1. chain a [114571] picpiclink
    25. RNA-binding protein Raly (Autoantigen p542) [117959]
      1. Human (Homo sapiens) [TaxId: 9606] [117960] (1)
        SQ Q9UKM9 1-97
        1. 1wf1 picpic
          Structural genomics target
          1. chain a [114572] picpiclink
    26. Heterogeneous nuclear ribonucleoproteins C1/C2 [117961]
      1. Human (Homo sapiens) [TaxId: 9606] [117962] (1)
        SQ P07910 8-92
        1. 1wf2 picpic
          Structural genomics target
          1. chain a [114573] picpiclink
    27. Probable RNA-binding protein KIAA1579 [117963]
      1. Human (Homo sapiens) [TaxId: 9606] [117964] (1)
        SQ Q9HCJ3 71-145
        1. 1wg1 picpic
          Structural genomics target
          1. chain a [114599] picpiclink
    28. Splicing factor, arginine/serine-rich 9 (SFRS9) [117965]
      1. Mouse (Mus musculus) [TaxId: 10090] [117966] (1)
        SQ Q9D0B0 104-188
        1. 1wg4 picpic
          Structural genomics target
          1. chain a [114601] picpiclink
    29. Poly(A)-specific ribonuclease PARN [117967]
      1. Mouse (Mus musculus) [TaxId: 10090] [117968] (1)
        SQ Q8VDG3 430-516; structure of the R3H domain (162-248) is also known (scop_sp 111031)
        1. 1whv picpic
          Structural genomics target
          1. chain a [114652] picpiclink
    30. Probable RNA-binding protein 19, Rbm19 [117969]
      1. Mouse (Mus musculus) [TaxId: 10090] [117970] (4)
        SQ Q8R3C6 399-484; 581-678
        1. 1whw picpic
          Structural genomics target; 3rd RBD
          1. chain a [114653] picpiclink
        2. 1whx picpic
          Structural genomics target; 4th RBD
          1. chain a [114654] picpiclink
        3. 2cph picpic
          1. region a:454-547 [130700] picpiclink
        4. 2cpf picpic
          1. region a:362-446 [130699] picpiclink
    31. Putative RNA-binding protein 15B, Rbm15b [117971]
      1. Mouse (Mus musculus) [TaxId: 10090] [117972] (1)
        SQ Q6PHZ5 81-164
        1. 1why picpic
          Structural genomics target
          1. chain a [114655] picpiclink
    32. Eukaryotic translation initiation factor 4B [117973]
      1. Human (Homo sapiens) [TaxId: 9606] [117974] (1)
        SQ P23588 88-178
        1. 1wi8 picpic
          Structural genomics target
          mutant
          1. chain a [114662] picpiclink
    33. HIV Tat-specific factor 1 [143290]
      1. Human (Homo sapiens) [TaxId: 9606] [143291] (1)
        SQ O43719 256-354
        1. 2dit picpic
          1. region a:8-106 [131533] picpiclink
    34. Ataxin-2-binding protein 1 [143292]
      1. Human (Homo sapiens) [TaxId: 9606] [143293] (1)
        SQ Q9NWB1 109-196
        1. 2err picpic
          1. region a:109-196 [132303] picpiclink
    35. E3 ubiquitin protein ligase CNOT4 [143294]
      CCR4-NOT transcription complex subunit 4
      1. Mouse (Mus musculus) [TaxId: 10090] [143295] (1)
        SQ Q8BT14 101-198
        1. 2cpi picpic
          1. region a:101-189 [130701] picpiclink
    36. RNA-binding protein 41, RBM41 [143296]
      1. Human (Homo sapiens) [TaxId: 9606] [143297] (1)
        SQ Q96IZ5 291-392
        1. 2cpx picpic
          1. region a:291-392 [130708] picpiclink
    37. Nucleolysin TIAR [143298]
      1. Human (Homo sapiens) [TaxId: 9606] [143299] (2)
        SQ Q01085 1-90! SQ Q01085 187-282
        1. 2cqi picpic
          1st RBD
          1. region a:1-90 [130724] picpiclink
        2. 1x4g picpic
          2nd RBD
          1. region a:8-103 [121689] picpiclink
    38. Cold-inducible RNA-binding protein [143300]
      1. Human (Homo sapiens) [TaxId: 9606] [143301] (1)
        SQ Q14011 1-90
        1. 1x5s picpic
          1. region a:8-97 [121719] picpiclink
    39. Negative elongation factor E, NELF-E [143302]
      1. Human (Homo sapiens) [TaxId: 9606] [143303] (3)
        SQ P18615 257-335! SQ P18615 258-341
        1. 2bz2 picpic
          1. region a:35-113 [129533] picpiclink
        2. 2jx2 picpic
          automatically matched to d1x5pa1
          1. region a:35-115 [148233] picpiclink
        3. 1x5p picpic
          1. region a:8-91 [121716] picpiclink
    40. Eukaryotic translation initiation factor 3 subunit 4 [143304]
      1. Human (Homo sapiens) [TaxId: 9606] [143305] (1)
        SQ O75821 231-320
        1. 2cq0 picpic
          1. region a:231-320 [130711] picpiclink
    41. Matrin 3 [143306]
      1. Mouse (Mus musculus) [TaxId: 10090] [143307] (2)
        SQ Q8K310 390-478! SQ Q8K310 478-576
        1. 1x4d picpic
          1st RBD
          mutant
          1. region a:8-96 [121686] picpiclink
        2. 1x4f picpic
          2nd RBD
          1. region a:8-106 [121688] picpiclink
    42. Ribonucleoprotein PTB-binding 1, Raver-1 [143308]
      1. Mouse (Mus musculus) [TaxId: 10090] [143309] (1)
        SQ Q9CW46 61-135
        1. 1wi6 picpic
          1. region a:69-143 [120974] picpiclink
    43. Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310]
      1. Human (Homo sapiens) [TaxId: 9606] [143311] (1)
        SQ Q9UNP9 1-89
        1. 2cqb picpic
          1. region a:1-89 [130717] picpiclink
    44. Arginine/serine-rich splicing factor 10 [143312]
      1. Human (Homo sapiens) [TaxId: 9606] [143313] (1)
        SQ P62995 109-191
        1. 2cqc picpic
          1. region a:109-191 [130718] picpiclink
    45. RNA-binding protein 9 [143314]
      1. Human (Homo sapiens) [TaxId: 9606] [143315] (1)
        SQ O43251 110-202
        1. 2cq3 picpic
          1. region a:110-202 [130714] picpiclink
    46. Pre-mRNA branch site protein p14 [143316]
      1. Human (Homo sapiens) [TaxId: 9606] [143317] (4)
        SQ Q9Y3B4 12-125
        1. 2f9d picpic
          complex with peptide from Splicing factor 3B subunit 1 (SQ O75533 373-415), chains P and Q
          1. region a:12-125 [133159] picpiclink
        2. 2f9d picpic
          automatically matched to 2F9D A:12-125
          1. region b:12-125 [133160] picpiclink
        3. 2f9j picpic
          complex with peptide from Splicing factor 3B subunit 1 (SQ O75533 381-415), chains P and Q
          mutant
          1. region a:12-125 [133164] picpiclink
        4. 2f9j picpic
          automatically matched to 2F9J A:12-125
          mutant
          1. region b:12-125 [133165] picpiclink
    47. Splicing factor 3B subunit 4 [143318]
      1. Human (Homo sapiens) [TaxId: 9606] [143319] (2)
        SQ Q15427 102-184! SQ Q15427 4-96
        1. 1x5t picpic
          2nd RBD
          1. region a:8-90 [121720] picpiclink
        2. 1x5u picpic
          1st RBD
          1. region a:7-99 [121721] picpiclink
    48. RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320]
      1. Human (Homo sapiens) [TaxId: 9606] [143321] (1)
        SQ Q15434 58-129
        1. 1x4e picpic
          1. region a:8-79 [121687] picpiclink
    49. RNA-binding protein UBP1 [143322]
      1. Trypanosoma cruzi [TaxId: 5693] [143323] (1)
        SQ Q967R0 1-139
        1. 1u6f picpic
          1. region a:1-139 [119572] picpiclink
    50. Limkain-b1, LKAP [143324]
      KIAA0430
      1. Human (Homo sapiens) [TaxId: 9606] [143325] (1)
        SQ Q9Y4F3 788-870
        1. 2dgx picpic
          1. region a:563-635 [131515] picpiclink
    51. APOBEC1 stimulating protein [143326]
      1. Human (Homo sapiens) [TaxId: 9606] [143327] (1)
        SQ Q9NQ94 223-308
        1. 2cpd picpic
          1. region a:223-308 [130697] picpiclink
    52. Hypothetical protein FLJ20273 [143328]
      1. Human (Homo sapiens) [TaxId: 9606] [143329] (1)
        SQ Q8NI52 150-245
        1. 2dis picpic
          1. region a:8-103 [131532] picpiclink
    53. Nucleoporin 35 [143330]
      1. Mouse (Mus musculus) [TaxId: 10090] [143331] (4)
        SQ Q8R4R6 169-249
        1. 1wwh picpic
          1. region a:169-249 [121358] picpiclink
        2. 1wwh picpic
          automatically matched to 1WWH A:169-249
          1. region b:171-249 [121359] picpiclink
        3. 1wwh picpic
          automatically matched to 1WWH A:169-249
          1. region c:171-249 [121360] picpiclink
        4. 1wwh picpic
          automatically matched to 1WWH A:169-249
          1. region d:170-249 [121361] picpiclink
    54. Polypyrimidine tract-binding protein 2, PTBP2 [143332]
      1. Human (Homo sapiens) [TaxId: 9606] [143333] (1)
        SQ Q9UKA9 51-138
        1. 2cq1 picpic
          1st RBD
          1. region a:51-138 [130712] picpiclink
    55. Alkylation repair AlkB homolog 8, ALKBH8 [143334]
      1. Human (Homo sapiens) [TaxId: 9606] [143335] (1)
        SQ Q96BT7 25-125
        1. 2cq2 picpic
          1. region a:25-125 [130713] picpiclink
    56. CUG triplet repeat RNA-binding protein 1 [143336]
      1. Human (Homo sapiens) [TaxId: 9606] [143337] (1)
        SQ Q92879 383-484
        1. 2cpz picpic
          3rdRBD
          1. region a:383-484 [130710] picpiclink
    57. U4/U6 snRNA-associated-splicing factor PRP24 [143338]
      contains three RBDs
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [143339] (24)
        SQ P49960 116-196! SQ P49960 206-291! SQ P49960 41-115
        1. 2ghp picpic
          1. region a:116-196 [135184] picpiclink
        2. 2ghp picpic
          1. region a:41-115 [135185] picpiclink
        3. 2ghp picpic
          1. region a:206-291 [135186] picpiclink
        4. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region b:116-196 [135187] picpiclink
        5. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region b:41-115 [135188] picpiclink
        6. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region b:206-291 [135189] picpiclink
        7. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region c:116-196 [135190] picpiclink
        8. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region c:41-115 [135191] picpiclink
        9. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region c:206-291 [135192] picpiclink
        10. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region d:116-196 [135193] picpiclink
        11. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region d:41-115 [135194] picpiclink
        12. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region d:206-291 [135195] picpiclink
        13. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region e:116-196 [135196] picpiclink
        14. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region e:41-115 [135197] picpiclink
        15. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region e:206-291 [135198] picpiclink
        16. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region f:116-196 [135199] picpiclink
        17. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region f:41-115 [135200] picpiclink
        18. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region f:206-291 [135201] picpiclink
        19. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region g:116-196 [135202] picpiclink
        20. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region g:41-115 [135203] picpiclink
        21. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region g:206-291 [135204] picpiclink
        22. 2ghp picpic
          automatically matched to 2GHP A:116-196
          1. region h:116-196 [135205] picpiclink
        23. 2ghp picpic
          automatically matched to 2GHP A:41-115
          1. region h:41-115 [135206] picpiclink
        24. 2ghp picpic
          automatically matched to 2GHP A:206-291
          1. region h:206-291 [135207] picpiclink
    58. RNA-binding protein EWS [143340]
      1. Human (Homo sapiens) [TaxId: 9606] [143341] (1)
        SQ Q01844 353-453
        1. 2cpe picpic
          1. region a:353-453 [130698] picpiclink
    59. Heterogeneous nuclear ribonucleoproteins A2/B1 [143342]
      1. Human (Homo sapiens) [TaxId: 9606] [143343] (1)
        SQ P22626 1-103
        1. 1x4b picpic
          1st RBD
          1. region a:8-110 [121684] picpiclink
    60. IGF-II mRNA-binding protein 2 isoform A [143344]
      1. Human (Homo sapiens) [TaxId: 9606] [143345] (1)
        SQ Q9Y6M1 2-81
        1. 2cqh picpic
          1st RBD
          1. region a:2-81 [130723] picpiclink
    61. Splicing factor, arginine/serine-rich 1, SFRS1 [143346]
      1. Human (Homo sapiens) [TaxId: 9606] [143347] (3)
        SQ Q07955 1-95
        1. 3beg picpic
          automatically matched to d1x4ca1
          complexed with ala, anp
          1. region b:121-207 [155185] picpiclink
        2. 1x4a picpic
          1st RBD
          1. region a:9-103 [121683] picpiclink
        3. 2o3d picpic
          automatically matched to d1x4ca1
          1. region a:121-207 [148572] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [143348] (1)
        SQ Q6PDM2 112-206
        1. 1x4c picpic
          1. region a:8-102 [121685] picpiclink
    62. RNA-binding protein 12 [143349]
      3rd RBD
      1. Human (Homo sapiens) [TaxId: 9606] [143350] (2)
        SQ Q9NTZ6 412-523! SQ Q9NTZ6 536-638
        1. 1wel picpic
          1st RBD
          1. region a:412-523 [120965] picpiclink
        2. 2cpy picpic
          2nd RBD
          1. region a:536-638 [130709] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [143351] (1)
        SQ Q8R4X3 917-1002
        1. 2cqp picpic
          C-terminal (4th) RBD
          1. region a:917-1002 [130727] picpiclink
    63. RNA binding protein 23 [143352]
      1. Human (Homo sapiens) [TaxId: 9606] [143353] (1)
        SQ Q86U06 148-248
        1. 2cq4 picpic
          1st RBD
          1. region a:132-232 [130715] picpiclink
    64. Non-POU domain-containing octamer-binding protein, NonO [143354]
      1. Mouse (Mus musculus) [TaxId: 10090] [143355] (1)
        SQ Q99K48 68-153
        1. 2cpj picpic
          1st RBD
          1. region a:65-150 [130702] picpiclink
    65. RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356]
      1. Human (Homo sapiens) [TaxId: 9606] [143357] (1)
        SQ P29558 123-223
        1. 1x5o picpic
          1. region a:8-108 [121715] picpiclink
    66. RNA-binding protein 28 [143358]
      1. Mouse (Mus musculus) [TaxId: 10090] [143359] (1)
        SQ Q8CGC6 316-413
        1. 1x4h picpic
          mutant
          1. region a:8-105 [121690] picpiclink
    67. RNA-binding region containing protein 1 [143360]
      1. Human (Homo sapiens) [TaxId: 9606] [143361] (1)
        SQ Q9H0Z9 1-103
        1. 2cqd picpic
          1. region a:1-103 [130719] picpiclink
  2. Non-canonical RBD domain [54954] (1)
    1. mRNA export factor tap [54955]
      1. Human (Homo sapiens) [TaxId: 9606] [54956] (5)
        1. 1koh picpicxrefxref
          mutant
          1. region a:105-200 [68720] picpiclink
          2. region c:104-200 [68723] picpiclink
        2. 1koo picpicxrefxref
          mutant
          1. region a:105-200 [68727] picpiclink
          2. region c:101-200 [68730] picpiclink
        3. 1fo1 picpicxrefxref
          disordered
          1. region a:123-191 [39213] picpiclink
        4. 1ft8 picpicxrefxref
          mutant
          1. chain e [39216] picpiclink
        5. 1ft8 picpicxrefxref
          chain E domain disordered
          mutant
          1. region a:118-199 [39214] picpiclink
          2. region c:117-198 [39215] picpiclink
  3. Splicing factor U2AF subunits [64276] (1)
    1. U2AF35 (35 KDa subunit) [64277]
      1. Human (Homo sapiens) [TaxId: 9606] [64278] (1)
        1. 1jmt picpic
          heterodimer with a fragment U2AF65 subunit; chain B
          complexed with hez; mutant
          1. chain a [63180] picpiclink
  4. Smg-4/UPF3 [102987] (1)
    Pfam 03467
    1. RNA processing protein UPF3x, RRM domain [102988]
      1. Human (Homo sapiens) [TaxId: 9606] [102989] (1)
        1. 1uw4 picpicxref
          complexed with bme
          1. chain a [100071] picpiclink
          2. chain c [100073] picpiclink
  5. GUCT domain [160314] (1)
    Pfam 08152
    1. ATP-dependent RNA helicase DDX50 [160315]
      1. Human (Homo sapiens) [TaxId: 9606] [160316] (1)
        SQ Q9BQ39 575-659
        1. 2e29 picpic
          1. region a:8-92 [146643] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk