Superfamily: Viral DNA-binding domain

uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Ferredoxin-like [54861]
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
4. Superfamily: Viral DNA-binding domain [54957]
   uperfamily

Families:

1. Viral DNA-binding domain [54958] (6)
   1. Papillomavirus-1 E2 protein [54959]
      forms dimers with subunit beta-sheets making (8,12) barrel
      1. Bovine papillomavirus type 1 [TaxId: 10559] [54960] (3)
         1. 2bop
            protein/DNA complex; complexed with yb
            1. chain a [39217]
         2. 1jjh
            1. chain a [63119]
            2. chain b [63120]
            3. chain c [63121]
         3. 1dbd
            1. chain a [39218]
            2. chain b [39219]
      2. Human papillomavirus type 31 [TaxId: 10585] [54961] (2)
         1. 1a7g
            complexed with so4
            1. chain e [39220]
         2. 1dhm
            1. chain a [39221]
            2. chain b [39222]
      3. Human papillomavirus type 16 [TaxId: 333760] [54962] (5)
         SQ P03120 286-365
         1. 2q79
            automatically matched to d1r8pa_
            complexed with so4
            1. region a:284-362 [150084]
         2. 1by9
            1. chain a [39223]
         3. 1zzf
            automatically matched to d1by9__
            1. region a:2-80 [125902]
         4. 1zzf
            automatically matched to d1by9__
            1. region b:2-80 [125903]
         5. 1r8p
            1. chain a [111720]
            2. chain b [111721]
      4. Human papillomavirus type 18 [TaxId: 333761] [54963] (2)
         1. 1f9f
            complexed with so4
            1. chain a [39224]
            2. chain b [39225]
            3. chain c [39226]
            4. chain d [39227]
         2. 1jj4
            1. chain a [63112]
            2. chain b [63113]
      5. Human papillomavirus type 6a [TaxId: 37122] [102990] (11)
         1. 1r8h
            complexed with po4
            1. chain a [97233]
            2. chain b [97234]
            3. chain c [97235]
            4. chain d [97236]
            5. chain e [97237]
            6. chain f [97238]
         2. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region a:282-366 [127546]
         3. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region b:281-366 [127547]
         4. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region c:281-366 [127548]
         5. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region d:281-366 [127549]
         6. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region e:281-366 [127550]
         7. 2aye
            automatically matched to d1r8ha_
            complexed with gol, so4
            1. region f:282-366 [127551]
         8. 2ayg
            automatically matched to d1r8ha_
            1. region a:281-366 [127552]
         9. 2ayg
            automatically matched to d1r8ha_
            1. region b:281-366 [127553]
         10. 2ayb
             automatically matched to d1r8ha_
             1. region a:281-366 [127544]
         11. 2ayb
             automatically matched to d1r8ha_
             1. region b:281-366 [127545]
   2. Epstein barr virus nuclear antigen-1 (ebna1) [54964]
      DNA-binding mode differs from that of E2 protein
      1. Epstein-Barr virus [TaxId: 10376] [54965] (2)
         1. 1b3t
            protein/DNA complex
            1. chain a [39228]
            2. chain b [39229]
         2. 1vhi
            1. chain a [39230]
            2. chain b [39231]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk