Fold: THUMP domain

contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: THUMP domain [143436]
   contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel

Superfamilies:

1. THUMP domain-like [143437] (3)
   predicted RNA-binding function
   uperfamily
   1. THUMP domain [143438] (2)
      Pfam 02926
      1. Thiamine biosynthesis protein ThiI, N-terminal domain [143439]
         1. Bacillus anthracis [TaxId: 1392] [143440] (1)
            SQ Q81KU0 3-173
      2. Hypothetical protein PH1313, N-terminal domain [143441]
         1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143442] (2)
            SQ O59053 1-175
   2. PAE0736-like [143443] (1)
      orphan protein; rudiment, disulfide-stabilized form of THUMP domain fold
      1. Hypothetical protein PAE0736 [143444]
         1. Pyrobaculum aerophilum [TaxId: 13773] [143445] (2)
            SQ Q8ZYK2 1-98
   3. Minimal THUMP [160383] (1)
      subfamily of Pfam 02926; 4 stranded mixed beta-sheet with 2 helices on one side and a crossover loop on the other side
      1. THUMP domain-containing protein 1 [160384]
         1. Human (Homo sapiens) [TaxId: 9606] [160385] (1)
            SQ Q9NXG2 170-254

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk