Structural Classification of Proteins
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Superfamily: THUMP domain-like

predicted RNA-binding function
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: THUMP domain [143436]
    contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel
  4. Superfamily: THUMP domain-like [143437]
    predicted RNA-binding function
    link to SUPERFAMILY database - Superfamily

Families:

  1. THUMP domain [143438] (2)
    Pfam 02926
    1. Thiamine biosynthesis protein ThiI, N-terminal domain [143439]
      1. Bacillus anthracis [TaxId: 1392] [143440] (1)
        SQ Q81KU0 3-173
        1. 2c5s picpicxref
          complexed with amp
          1. region a:3-173 [129951] picpiclink
    2. Hypothetical protein PH1313, N-terminal domain [143441]
      1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143442] (2)
        SQ O59053 1-175
        1. 1vbk picpicxrefxref
          complexed with mrd
          1. region a:1-175 [119958] picpiclink
        2. 1vbk picpicxrefxref
          automatically matched to 1VBK A:1-175
          complexed with mrd
          1. region b:1-175 [119960] picpiclink
  2. PAE0736-like [143443] (1)
    orphan protein; rudiment, disulfide-stabilized form of THUMP domain fold
    1. Hypothetical protein PAE0736 [143444]
      1. Pyrobaculum aerophilum [TaxId: 13773] [143445] (2)
        SQ Q8ZYK2 1-98
        1. 1rki picpic
          complexed with act, cl, p6g, pg4, so4
          1. region a:1-98 [118776] picpiclink
        2. 1rki picpic
          automatically matched to 1RKI A:1-98
          complexed with act, cl, p6g, pg4, so4
          1. region b:1-97 [118777] picpiclink
  3. Minimal THUMP [160383] (1)
    subfamily of Pfam 02926; 4 stranded mixed beta-sheet with 2 helices on one side and a crossover loop on the other side
    1. THUMP domain-containing protein 1 [160384]
      1. Human (Homo sapiens) [TaxId: 9606] [160385] (1)
        SQ Q9NXG2 170-254
        1. 2dir picpic
          1. region a:8-92 [146528] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk