Structural Classification of Proteins
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Fold: DNA-binding domain

beta(3)-alpha; 2 layers: alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: DNA-binding domain [54170]
    beta(3)-alpha; 2 layers: alpha/beta

Superfamilies:

  1. DNA-binding domain [54171] (4)
    link to SUPERFAMILY database - Superfamily
    1. DNA-binding domain from tn916 integrase [54172] (1)
      1. DNA-binding domain from tn916 integrase [54173]
        1. Enterococcus faecalis [TaxId: 1351] [54174] (4)
          1. 1bb8 picpic
            1. chain a [37478] picpiclink
          2. 2bb8 picpic
            1. chain a [37480] picpiclink
          3. 1tn9 picpic
            protein/DNA complex; mutant
            1. chain a [37481] picpiclink
          4. 1b69 picpic
            protein/DNA complex; mutant
            1. chain a [37479] picpiclink
    2. lambda integrase N-terminal domain [75344] (1)
      1. lambda integrase N-terminal domain [75345]
        1. Bacteriophage lambda [TaxId: 10710] [75346] (7)
          1. 1z1b picpicxrefxref
            automatically matched to d1kjka_
            mutant
            1. region a:11-59 [124346] picpiclink
          2. 1z1b picpicxrefxref
            automatically matched to d1kjka_
            mutant
            1. region b:11-59 [124348] picpiclink
          3. 1kjk picpic
            1. chain a [72613] picpiclink
          4. 1z1g picpicxrefxrefxrefxref
            automatically matched to d1kjka_
            mutant
            1. region a:11-59 [124353] picpiclink
          5. 1z1g picpicxrefxrefxrefxref
            automatically matched to d1kjka_
            mutant
            1. region b:11-59 [124355] picpiclink
          6. 1z1g picpicxrefxrefxrefxref
            automatically matched to d1kjka_
            mutant
            1. region c:11-59 [124357] picpiclink
          7. 1z1g picpicxrefxrefxrefxref
            automatically matched to d1kjka_
            mutant
            1. region d:11-59 [124359] picpiclink
    3. GCC-box binding domain [54175] (1)
      1. GCC-box binding domain [54176]
        1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [54177] (3)
          1. 1gcc picpic
            protein/DNA complex
            1. chain a [37482] picpiclink
          2. 3gcc picpic
            1. chain a [37483] picpiclink
          3. 2gcc picpic
            1. chain a [37484] picpiclink
    4. Methyl-CpG-binding domain, MBD [54178] (3)
      1. Methyl-CpG-binding protein 2, MECP2 [54179]
        1. Human (Homo sapiens) [TaxId: 9606] [54180] (1)
          1. 1qk9 picpic
            1. chain a [37485] picpiclink
        2. Chicken (Gallus gallus) [TaxId: 9031] [102734] (1)
          1. 1ub1 picpic
            1. chain a [99140] picpiclink
      2. Methylation-dependent transcriptional repressor MBD1/PCM1 [54181]
        1. Human (Homo sapiens) [TaxId: 9606] [54182] (2)
          1. 1ig4 picpic
            complex with methylated DNA
            complexed with ch3
            1. chain a [62362] picpiclink
          2. 1d9n picpic
            1. chain a [37486] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk