Structural Classification of Proteins
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Superfamily: Hedgehog/DD-peptidase

zinc-binding motif
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Hedgehog/DD-peptidase [55165]
    alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta
  4. Superfamily: Hedgehog/DD-peptidase [55166]
    zinc-binding motif
    link to SUPERFAMILY database - Superfamily

Families:

  1. Muramoyl-pentapeptide carboxypeptidase [55167] (1)
    1. Zn2+ DD-carboxypeptidase C-terminal catalytic domain [55168]
      1. Streptomyces albus G [TaxId: 1962] [55169] (1)
        1. 1lbu picpicxref
          complexed with zn
          1. region a:84-213 [39549] picpiclink
  2. MepA-like [111019] (1)
    1. D-alanyl-D-alanine-endopeptidase MepA [111020]
      1. Escherichia coli [TaxId: 562] [111021] (2)
        SQ P14007
        1. 1tzp picpic
          complexed with bu1, sul
          1. chain a [107520] picpiclink
          2. chain b [107521] picpiclink
        2. 1u10 picpic
          complexed with sul, zn2
          1. chain a [107570] picpiclink
          2. chain b [107571] picpiclink
          3. chain c [107572] picpiclink
          4. chain d [107573] picpiclink
          5. chain e [107574] picpiclink
          6. chain f [107575] picpiclink
  3. VanX-like [111022] (1)
    Pfam 01427
    1. D-Ala-D-Ala dipeptidase VanX [111023]
      1. Enterococcus faecium [TaxId: 1352] [111024] (1)
        SQ Q06241
        1. 1r44 picpic
          complexed with zn
          1. chain a [104787] picpiclink
          2. chain b [104788] picpiclink
          3. chain c [104789] picpiclink
          4. chain d [104790] picpiclink
          5. chain e [104791] picpiclink
          6. chain f [104792] picpiclink
  4. Hedgehog (development protein), N-terminal signaling domain [55170] (2)
    1. Sonic hedgehog [55171]
      1. Mouse (Mus musculus) [TaxId: 10090] [55172] (3)
        1. 3d1m picpic
          automatically matched to d1vhha_
          complexed with ca, zn
          1. region a:41-188 [157210] picpiclink
        2. 3d1m picpic
          automatically matched to d1vhha_
          complexed with ca, zn
          1. region b:41-188 [157211] picpiclink
        3. 1vhh picpic
          complexed with so4, zn
          1. chain a [39550] picpiclink
    2. Hedgehog [143496]
      lacks the conserved metal ion-binding site
      1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [143497] (4)
        SQ Q02936 50-198
        1. 2ibg picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with po4
          1. region e:100-248 [137190] picpiclink
        2. 2ibg picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2IBG E:100-248
          complexed with po4
          1. region f:100-246 [137191] picpiclink
        3. 2ibg picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2IBG E:100-248
          complexed with po4
          1. region g:100-247 [137192] picpiclink
        4. 2ibg picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2IBG E:100-248
          complexed with po4
          1. region h:100-248 [137193] picpiclink
  5. VanY-like [160436] (1)
    Pfam 02557
    1. L-alanyl-D-glutamate peptidase Ply [160437]
      1. Listeria phage A500 [TaxId: 40522] [160438] (3)
        SQ Q37979 1-148
        1. 2vo9 picpic
          complexed with so4, zn
          1. region a:1-148 [153362] picpiclink
        2. 2vo9 picpic
          automatically matched to 2VO9 A:1-148
          complexed with so4, zn
          1. region b:1-148 [153363] picpiclink
        3. 2vo9 picpic
          automatically matched to 2VO9 A:1-148
          complexed with so4, zn
          1. region c:1-148 [153364] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk