Fold: Alpha-L RNA-binding motif

alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Alpha-L RNA-binding motif [55173]
   alpha(2)-beta(2)-loop-beta; 2 layers: alpha/beta

Superfamilies:

1. Alpha-L RNA-binding motif [55174] (5)
   common motif in otherwise different folds
   uperfamily
   1. Ribosomal protein S4 [55178] (3)
      has a RRF/tRNA synthetase additional domain-like fold
      1. Ribosomal protein S4 [55179]
         also contains a Zn-binding N-terminal subdomain
         1. Thermus thermophilus [TaxId: 274] [55180] (45)
         2. Bacillus stearothermophilus [TaxId: 1422] [55181] (2)
         3. Escherichia coli [TaxId: 562] [160439] (26)
            SQ P0A7V8 1-205
   2. Heat shock protein 15 kD [55182] (1)
      there are additional C-terminal structures
      1. Heat shock protein 15 kD [55183]
         ribosome-binding protein
         1. Escherichia coli [TaxId: 562] [55184] (2)
   3. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75465] (2)
      there are additional N-terminal structures
      1. Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain [75466]
         1. Thermus thermophilus [TaxId: 274] [82701] (2)
         2. Bacillus stearothermophilus [TaxId: 1422] [75467] (1)
   4. YbcJ-like [103046] (1)
      overall topological similarity to the TyrRS C-domain
      1. Hypothetical protein YbcJ [103047]
         1. Escherichia coli [TaxId: 562] [103048] (1)
   5. Pseudouridine synthase RsuA N-terminal domain [75468] (2)
      1. Pseudouridine synthase RsuA N-terminal domain [75469]
         1. Escherichia coli [TaxId: 562] [75470] (3)
         2. Haemophilus influenzae [TaxId: 727] [103049] (1)

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk