Structural Classification of Proteins
Fold: RRF/tRNA synthetase additional domain-like
core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a+b)
[53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:
RRF/tRNA synthetase additional domain-like
[55185]
core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta
Superfamilies:
ThrRS/AlaRS common domain
[55186] (2)
putative editing domain found in the N-terminal part of ThrRS, the C-terminal of AlaRS, and as a stand-alone protein; probable circular permutation of LuxS
(
d.185.1.2
)
uperfamily
Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
[55187] (2)
Threonyl-tRNA synthetase (ThrRS), second 'additional' domain [55188]
Escherichia coli
[TaxId: 562]
[55189] (5)
SQ
P0A8M3
1tke
complexed with ser
region a:63-224
[112471]
1tky
complexed with a3s
region a:63-224
[112489]
1tje
region a:63-224
[112445]
1tkg
complexed with ssa
region a:63-224
[112473]
1qf6
complexed with aet, amp, dhu, g7m, psu, zn
region a:63-241
[39562]
Staphylococcus aureus
[TaxId: 1280]
[103050] (2)
1nyr
complexed with atp, thr, zn
region a:63-241
[92356]
region b:63-241
[92360]
1nyq
complexed with tsb, zn
region a:63-241
[92348]
region b:63-241
[92352]
AlaX-like
[103051] (2)
Hypothetical protein PH0574 [103052]
stand-alone protein related to the AlaRS domain
Archaeon Pyrococcus horikoshii
[TaxId: 53953]
[103053] (7)
SQ
P27248
1v4p
complexed with zn2
chain a
[113533]
chain b
[113534]
chain c
[113535]
1wxo
automatically matched to d1v7oa_
complexed with zn
region a:1-152
[121403]
1wxo
automatically matched to d1v7oa_
complexed with zn
region b:1-154
[121404]
1wxo
automatically matched to d1v7oa_
complexed with zn
region c:1-152
[121405]
1v7o
chain a
[100480]
chain b
[100481]
1wnu
automatically matched to d1v7oa_
complexed with ser, zn
region a:1-154
[121106]
1wnu
automatically matched to d1v7oa_
complexed with ser, zn
region b:1-152
[121107]
AlaX-M trans-editing enzyme, C-terminal domain [160440]
Pyrococcus horikoshii
[TaxId: 53953]
[160441] (1)
SQ
O57848
88-216
2e1b
complexed with zn
region a:88-216
[146624]
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
[55190] (1)
uperfamily
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
[55191] (2)
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain [55192]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[55193] (3)
1f7u
complexed with 1ma, 1mg, 2mg, 5mc, 5mu, arg, dhu, m2g, psu, so4
region a:2-135
[59675]
1bs2
region a:5-135
[39563]
1f7v
complexed with 1ma, 1mg, 2mg, 5mc, 5mu, dhu, m2g, psu
region a:2-135
[59678]
Thermus thermophilus
[TaxId: 274]
[69749] (1)
1iq0
region a:1-96
[66259]
Ribosome recycling factor, RRF
[55194] (1)
uperfamily
Ribosome recycling factor, RRF
[55195] (7)
Ribosome recycling factor, RRF [55196]
Thermotoga maritima
[TaxId: 2336]
[55197] (1)
1dd5
chain a
[39564]
Thermus thermophilus
[TaxId: 274]
[55198] (9)
1eh1
chain a
[39565]
2v46
automatically matched to d1eh1a_
complexed with 5mu, mg, zn
region y:1-185
[152504]
2v48
automatically matched to d1eh1a_
complexed with 5mu, mg, zn
region y:1-185
[152540]
2qbe
automatically matched to d1eh1a_
complexed with mg, zn
region 6:1-185
[150458]
2qbg
automatically matched to d1eh1a_
complexed with mg, zn
region 6:1-185
[150512]
2qbi
automatically matched to d1eh1a_
complexed with lll, mg, zn
region 6:1-185
[150566]
2qbk
automatically matched to d1eh1a_
complexed with lll, mg, zn
region 6:1-185
[150620]
2z4l
automatically matched to d1eh1a_
complexed with mg, par, zn
region 6:1-185
[154076]
2z4n
automatically matched to d1eh1a_
complexed with mg, par, zn
region 6:1-185
[154130]
Escherichia coli
[TaxId: 562]
[64292] (5)
1ek8
complexed with dem, hg
chain a
[59444]
1ise
mutant
chain a
[90691]
2rdo
automatically matched to d1ek8a_
region 8:1-185
[151938]
1zn1
automatically matched to d1ek8a_
region a:1-185
[125370]
1zn0
automatically matched to d1ek8a_
region a:1-185
[125369]
Aquifex aeolicus
[TaxId: 63363]
[64293] (1)
1ge9
chain a
[60463]
Vibrio parahaemolyticus
[TaxId: 670]
[89970] (1)
1is1
chain a
[83704]
Mouse (Mus musculus), mitochondrial
[TaxId: 10090]
[118014] (1)
SQ
Q9D6S7
116-186
1wih
Structural genomics target; core domain only
chain a
[114672]
Mycobacterium tuberculosis
[TaxId: 1773]
[160442] (3)
SQ
Q10794
2-184
1wqg
automatically matched to 1WQF A:2-184
complexed with cd
region a:2-184
[145821]
1wqf
complexed with cd
region a:2-184
[145820]
1wqh
automatically matched to 1WQF A:2-184
complexed with cd
region a:2-184
[145822]
General secretion pathway protein M, EpsM
[103054] (1)
uperfamily
General secretion pathway protein M, EpsM
[103055] (1)
General secretion pathway protein M, EpsM [103056]
Vibrio cholerae
[TaxId: 666]
[103057] (1)
1uv7
chain a
[100040]
chain b
[100041]
Enter
search
key:
Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk