Structural Classification of Proteins
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Fold: RRF/tRNA synthetase additional domain-like

core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: RRF/tRNA synthetase additional domain-like [55185]
    core: alpha-beta(2)-alpha-beta(2); 2 layers: alpha/beta

Superfamilies:

  1. ThrRS/AlaRS common domain [55186] (2)
    putative editing domain found in the N-terminal part of ThrRS, the C-terminal of AlaRS, and as a stand-alone protein; probable circular permutation of LuxS (d.185.1.2)
    link to SUPERFAMILY database - Superfamily
    1. Threonyl-tRNA synthetase (ThrRS), second 'additional' domain [55187] (2)
      1. Threonyl-tRNA synthetase (ThrRS), second 'additional' domain [55188]
        1. Escherichia coli [TaxId: 562] [55189] (5) picpic
          SQ P0A8M3
        2. Staphylococcus aureus [TaxId: 1280] [103050] (2) picpic
    2. AlaX-like [103051] (2)
      1. Hypothetical protein PH0574 [103052]
        stand-alone protein related to the AlaRS domain
        1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [103053] (7) picpic
          SQ P27248
      2. AlaX-M trans-editing enzyme, C-terminal domain [160440]
        1. Pyrococcus horikoshii [TaxId: 53953] [160441] (1) picpic
          SQ O57848 88-216
  2. Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain [55190] (1)
    link to SUPERFAMILY database - Superfamily
    1. Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain [55191] (2)
      1. Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain [55192]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55193] (3) picpic
        2. Thermus thermophilus [TaxId: 274] [69749] (1) picpic
  3. Ribosome recycling factor, RRF [55194] (1)
    link to SUPERFAMILY database - Superfamily
    1. Ribosome recycling factor, RRF [55195] (7)
      1. Ribosome recycling factor, RRF [55196]
        1. Thermotoga maritima [TaxId: 2336] [55197] (1) picpic
        2. Thermus thermophilus [TaxId: 274] [55198] (9) picpic
        3. Escherichia coli [TaxId: 562] [64292] (5) picpic
        4. Aquifex aeolicus [TaxId: 63363] [64293] (1) picpic
        5. Vibrio parahaemolyticus [TaxId: 670] [89970] (1) picpic
        6. Mouse (Mus musculus), mitochondrial [TaxId: 10090] [118014] (1) picpic
          SQ Q9D6S7 116-186
        7. Mycobacterium tuberculosis [TaxId: 1773] [160442] (3) picpic
          SQ Q10794 2-184
  4. General secretion pathway protein M, EpsM [103054] (1)
    link to SUPERFAMILY database - Superfamily
    1. General secretion pathway protein M, EpsM [103055] (1)
      1. General secretion pathway protein M, EpsM [103056]
        1. Vibrio cholerae [TaxId: 666] [103057] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk