Structural Classification of Proteins
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Fold: Nucleocapsid protein dimerization domain

dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Nucleocapsid protein dimerization domain [103067]
    dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta

Superfamilies:

  1. Nucleocapsid protein dimerization domain [103068] (2)
    link to SUPERFAMILY database - Superfamily
    1. Arterivirus nucleocapsid protein [103069] (2)
      1. Arterivirus nucleocapsid protein [103070]
        1. PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344] [103071] (1)
          1. 1p65 picpic
            1. chain a [94156] picpiclink
            2. chain b [94157] picpiclink
        2. Equine arteritis virus [TaxId: 11047] [160463] (4)
          SQ Q66526 50-105
          1. 2i9f picpic
            complexed with cl, dtt, gol, na
            1. region a:50-105 [147567] picpiclink
          2. 2i9f picpic
            automatically matched to 2I9F A:50-105
            complexed with cl, dtt, gol, na
            1. region b:50-105 [147568] picpiclink
          3. 2i9f picpic
            automatically matched to 2I9F A:50-105
            complexed with cl, dtt, gol, na
            1. region c:51-105 [147569] picpiclink
          4. 2i9f picpic
            automatically matched to 2I9F A:50-105
            complexed with cl, dtt, gol, na
            1. region d:50-105 [147570] picpiclink
    2. Coronavirus nucleocapsid protein [143508] (2)
      C-terminal part of Pfam 00937
      1. Coronavirus nucleocapsid protein [143509]
        1. Avian infectious bronchitis virus [TaxId: 11120] [143510] (12)
          SQ P32923 222-333! SQ P32923 226-332! SQ Q4ZJS4 218-326
          different strains
          1. 2ge7 picpic
            1. region a:8-114 [135049] picpiclink
          2. 2ge7 picpic
            automatically matched to 2GE7 A:8-114
            1. region b:8-114 [135050] picpiclink
          3. 2ge8 picpic
            1. region a:4-115 [135051] picpiclink
          4. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region b:7-115 [135052] picpiclink
          5. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region c:7-115 [135053] picpiclink
          6. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region d:5-115 [135054] picpiclink
          7. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region f:8-113 [135055] picpiclink
          8. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region g:4-114 [135056] picpiclink
          9. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region i:7-113 [135057] picpiclink
          10. 2ge8 picpic
            automatically matched to 2GE8 A:4-115
            1. region j:8-115 [135058] picpiclink
          11. 2ca1 picpic
            1. region a:218-326 [130147] picpiclink
          12. 2ca1 picpic
            automatically matched to 2CA1 A:218-326
            1. region b:225-326 [130148] picpiclink
        2. SARS coronavirus [TaxId: 227859] [143511] (12)
          SQ P59595 270-366
          1. 2gib picpic
            complexed with so4
            1. region a:270-366 [135225] picpiclink
          2. 2gib picpic
            automatically matched to 2GIB A:270-366
            complexed with so4
            1. region b:274-366 [135226] picpiclink
          3. 2cjr picpic
            1. region a:251-365 [146399] picpiclink
          4. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region b:253-365 [146400] picpiclink
          5. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region c:253-365 [146401] picpiclink
          6. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region d:251-365 [146402] picpiclink
          7. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region e:256-365 [146403] picpiclink
          8. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region f:252-363 [146404] picpiclink
          9. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region g:255-363 [146405] picpiclink
          10. 2cjr picpic
            automatically matched to 2CJR A:251-365
            1. region h:256-365 [146406] picpiclink
          11. 2jw8 picpic
            automatically matched to 2CJR A:251-365
            1. region a:251-365 [148226] picpiclink
          12. 2jw8 picpic
            automatically matched to 2CJR A:251-365
            1. region b:251-365 [148227] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk