Structural Classification of Proteins

Superfamily: Nucleocapsid protein dimerization domain

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Nucleocapsid protein dimerization domain [103067]
dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta
Superfamily: Nucleocapsid protein dimerization domain [103068]
uperfamily

Families:

Arterivirus nucleocapsid protein [103069] (2)
1. Arterivirus nucleocapsid protein [103070]
  1. PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344] [103071] (1)
    1. 1p65
      1. chain a [94156]
      2. chain b [94157]
  2. Equine arteritis virus [TaxId: 11047] [160463] (4)
    SQ Q66526 50-105
    1. 2i9f
      complexed with cl, dtt, gol, na
      1. region a:50-105 [147567]
    2. 2i9f
      automatically matched to 2I9F A:50-105
      complexed with cl, dtt, gol, na
      1. region b:50-105 [147568]
    3. 2i9f
      automatically matched to 2I9F A:50-105
      complexed with cl, dtt, gol, na
      1. region c:51-105 [147569]
    4. 2i9f
      automatically matched to 2I9F A:50-105
      complexed with cl, dtt, gol, na
      1. region d:50-105 [147570]
Coronavirus nucleocapsid protein [143508] (2)
C-terminal part of Pfam 00937
1. Coronavirus nucleocapsid protein [143509]
  1. Avian infectious bronchitis virus [TaxId: 11120] [143510] (12)
    SQ P32923 222-333! SQ P32923 226-332! SQ Q4ZJS4 218-326
    different strains
    1. 2ge7
      1. region a:8-114 [135049]
    2. 2ge7
      automatically matched to 2GE7 A:8-114
      1. region b:8-114 [135050]
    3. 2ge8
      1. region a:4-115 [135051]
    4. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region b:7-115 [135052]
    5. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region c:7-115 [135053]
    6. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region d:5-115 [135054]
    7. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region f:8-113 [135055]
    8. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region g:4-114 [135056]
    9. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region i:7-113 [135057]
    10. 2ge8
      automatically matched to 2GE8 A:4-115
      1. region j:8-115 [135058]
    11. 2ca1
      1. region a:218-326 [130147]
    12. 2ca1
      automatically matched to 2CA1 A:218-326
      1. region b:225-326 [130148]
  2. SARS coronavirus [TaxId: 227859] [143511] (12)
    SQ P59595 270-366
    1. 2gib
      complexed with so4
      1. region a:270-366 [135225]
    2. 2gib
      automatically matched to 2GIB A:270-366
      complexed with so4
      1. region b:274-366 [135226]
    3. 2cjr
      1. region a:251-365 [146399]
    4. 2cjr
      automatically matched to 2CJR A:251-365
      1. region b:253-365 [146400]
    5. 2cjr
      automatically matched to 2CJR A:251-365
      1. region c:253-365 [146401]
    6. 2cjr
      automatically matched to 2CJR A:251-365
      1. region d:251-365 [146402]
    7. 2cjr
      automatically matched to 2CJR A:251-365
      1. region e:256-365 [146403]
    8. 2cjr
      automatically matched to 2CJR A:251-365
      1. region f:252-363 [146404]
    9. 2cjr
      automatically matched to 2CJR A:251-365
      1. region g:255-363 [146405]
    10. 2cjr
      automatically matched to 2CJR A:251-365
      1. region h:256-365 [146406]
    11. 2jw8
      automatically matched to 2CJR A:251-365
      1. region a:251-365 [148226]
    12. 2jw8
      automatically matched to 2CJR A:251-365
      1. region b:251-365 [148227]