Structural Classification of Proteins
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Family: Coronavirus nucleocapsid protein

C-terminal part of Pfam 00937

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Nucleocapsid protein dimerization domain [103067]
    dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta
  4. Superfamily: Nucleocapsid protein dimerization domain [103068]
    link to SUPERFAMILY database - Superfamily
  5. Family: Coronavirus nucleocapsid protein [143508]
    C-terminal part of Pfam 00937

Protein Domains:

  1. Coronavirus nucleocapsid protein [143509]
    1. Avian infectious bronchitis virus [TaxId: 11120] [143510] (12)
      SQ P32923 222-333! SQ P32923 226-332! SQ Q4ZJS4 218-326
      different strains
      1. 2ge7 picpic
        1. region a:8-114 [135049] picpiclink
      2. 2ge7 picpic
        automatically matched to 2GE7 A:8-114
        1. region b:8-114 [135050] picpiclink
      3. 2ge8 picpic
        1. region a:4-115 [135051] picpiclink
      4. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region b:7-115 [135052] picpiclink
      5. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region c:7-115 [135053] picpiclink
      6. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region d:5-115 [135054] picpiclink
      7. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region f:8-113 [135055] picpiclink
      8. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region g:4-114 [135056] picpiclink
      9. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region i:7-113 [135057] picpiclink
      10. 2ge8 picpic
        automatically matched to 2GE8 A:4-115
        1. region j:8-115 [135058] picpiclink
      11. 2ca1 picpic
        1. region a:218-326 [130147] picpiclink
      12. 2ca1 picpic
        automatically matched to 2CA1 A:218-326
        1. region b:225-326 [130148] picpiclink
    2. SARS coronavirus [TaxId: 227859] [143511] (12)
      SQ P59595 270-366
      1. 2gib picpic
        complexed with so4
        1. region a:270-366 [135225] picpiclink
      2. 2gib picpic
        automatically matched to 2GIB A:270-366
        complexed with so4
        1. region b:274-366 [135226] picpiclink
      3. 2cjr picpic
        1. region a:251-365 [146399] picpiclink
      4. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region b:253-365 [146400] picpiclink
      5. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region c:253-365 [146401] picpiclink
      6. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region d:251-365 [146402] picpiclink
      7. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region e:256-365 [146403] picpiclink
      8. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region f:252-363 [146404] picpiclink
      9. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region g:255-363 [146405] picpiclink
      10. 2cjr picpic
        automatically matched to 2CJR A:251-365
        1. region h:256-365 [146406] picpiclink
      11. 2jw8 picpic
        automatically matched to 2CJR A:251-365
        1. region a:251-365 [148226] picpiclink
      12. 2jw8 picpic
        automatically matched to 2CJR A:251-365
        1. region b:251-365 [148227] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk