Structural Classification of Proteins

Superfamily: RBP11-like subunits of RNA polymerase

: form homo and heterodimers
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: DCoH-like [55247]
beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
Superfamily: RBP11-like subunits of RNA polymerase [55257]
form homo and heterodimers
uperfamily

Families:

RBP11/RpoL [64311] (2)
1. RPB11 [64312]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64313] (25)
    SQ P38902; part of multichain biological unit
    1. 1twf
      complexed with mn, utp, zn
      1. chain k [112736]
    2. 1i50
      complexed with mn, zn
      1. chain k [61765]
    3. 1k83
      complexed with ilx, mn, trx, zn
      1. chain k [68286]
    4. 1i3q
      complexed with mg, zn
      1. chain k [61618]
    5. 2nvq
      automatically matched to d1i3qk_
      complexed with dut, mg, zn
      1. region k:1-114 [138645]
    6. 1twc
      complexed with gtp, mn, zn
      1. chain k [112722]
    7. 1twa
      complexed with atp, mn, zn
      1. chain k [112707]
    8. 1i6h
      complexed with mg, zn
      1. chain k [61842]
    9. 1twh
      complexed with atp, mn, zn
      1. chain k [112762]
    10. 1twg
      complexed with ctp, mn, zn
      1. chain k [112749]
    11. 2nvy
      automatically matched to d1i3qk_
      complexed with mn, zn
      1. region k:1-114 [138691]
    12. 2e2i
      automatically matched to d1i3qk_
      complexed with dgt, mg, zn
      1. region k:1-114 [132005]
    13. 2e2j
      automatically matched to d1i3qk_
      complexed with g2p, mg, zn
      1. region k:1-114 [132018]
    14. 2b63
      automatically matched to d1i3qk_
      complexed with 5bu, mg, zn
      1. region k:1-114 [127930]
    15. 2ja7
      automatically matched to d1i3qk_
      complexed with bru, mg, tt, zn
      1. region k:1-114 [138204]
    16. 2ja7
      automatically matched to d1i3qk_
      complexed with bru, mg, tt, zn
      1. region w:1-114 [138220]
    17. 2nvx
      automatically matched to d1i3qk_
      complexed with dut, mg, zn
      1. region k:1-114 [138678]
    18. 2nvt
      automatically matched to d1i3qk_
      complexed with g2p, mg, zn
      1. region k:1-114 [138658]
    19. 2ja5
      automatically matched to d1i3qk_
      complexed with bru, mg, zn
      1. region k:1-114 [138172]
    20. 2ja8
      automatically matched to d1i3qk_
      complexed with bru, mg, tt, zn
      1. region k:1-114 [138236]
    21. 2b8k
      automatically matched to d1i3qk_
      complexed with zn
      1. region k:1-114 [128090]
    22. 2ja6
      automatically matched to d1i3qk_
      complexed with bru, mg, tt, zn
      1. region k:1-114 [138188]
    23. 2yu9
      automatically matched to d1i3qk_
      complexed with mg, utp, zn
      1. region k:1-114 [140075]
    24. 2e2h
      automatically matched to d1i3qk_
      complexed with gtp, mg, zn
      1. region k:1-114 [131992]
    25. 2nvz
      automatically matched to d1i3qk_
      complexed with mg, utp, zn
      1. region k:1-114 [138704]
2. DNA-directed RNA polymerase subunit L, RpoL [118020]
  1. Thermoplasma acidophilum [TaxId: 2303] [118021] (1)
    SQ Q9HIC5
    1. 1xpp
      Structural genomics target
      complexed with acy, fmt, scn
      1. chain a [115768]
      2. chain b [115769]
      3. chain c [115770]
      4. chain d [115771]
RNA polymerase alpha subunit dimerisation domain [55258] (4)
1. RNA polymerase alpha [55259]
  1. Escherichia coli [TaxId: 562] [55260] (1)
    1. 1bdf
      mutant
      1. region a:2-52,a:179-232 [39727]
      2. region b:1-52,b:179-235 [39728]
      3. region c:1-52,c:179-235 [39729]
      4. region d:1-52,d:179-235 [39730]
  2. Thermus aquaticus [TaxId: 271] [64314] (7)
    1. 1ynj
      automatically matched to d1i6vb1
      complexed with srn, zn
      1. region a:6-49,a:173-231 [123737]
    2. 1ynj
      automatically matched to d1i6vb1
      complexed with srn, zn
      1. region b:6-49,b:173-228 [123739]
    3. 1i6v
      complexed with mg, rfp, zn
      1. region a:6-49,a:173-229 [61852]
      2. region b:3-49,b:173-232 [61854]
    4. 1ynn
      automatically matched to d1i6vb1
      complexed with rfp, zn
      1. region a:6-49,a:173-231 [123742]
    5. 1ynn
      automatically matched to d1i6vb1
      complexed with rfp, zn
      1. region b:6-49,b:173-228 [123744]
    6. 2gho
      automatically matched to d1i6vb1
      1. region a:6-49,a:173-231 [135180]
    7. 2gho
      automatically matched to d1i6vb1
      1. region b:6-49,b:173-228 [135182]
  3. Thermus thermophilus [TaxId: 274] [75478] (30)
    SQ Q9Z9H6; part of multichain biological unit
    1. 1smy
      complexed with g4p, mg, zn
      1. region a:1-49,a:173-229 [105774]
      2. region b:1-49,b:173-229 [105776]
      3. region k:1-49,k:173-229 [105784]
      4. region l:1-49,l:173-229 [105786]
    2. 2a6h
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region a:1-49,a:173-229 [126260]
    3. 2a6h
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region b:1-49,b:173-229 [126262]
    4. 2a6h
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region k:1-49,k:173-229 [126270]
    5. 2a6h
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region l:1-49,l:173-229 [126272]
    6. 2a69
      automatically matched to d1iw7a1
      complexed with mg, rpt, zn
      1. region a:1-49,a:173-229 [126211]
    7. 2a69
      automatically matched to d1iw7a1
      complexed with mg, rpt, zn
      1. region b:1-49,b:173-229 [126213]
    8. 2a69
      automatically matched to d1iw7a1
      complexed with mg, rpt, zn
      1. region k:1-49,k:173-229 [126221]
    9. 2a69
      automatically matched to d1iw7a1
      complexed with mg, rpt, zn
      1. region l:1-49,l:173-229 [126223]
    10. 2a68
      automatically matched to d1iw7a1
      complexed with mg, rbt, zn
      1. region a:1-49,a:173-229 [126191]
    11. 2a68
      automatically matched to d1iw7a1
      complexed with mg, rbt, zn
      1. region b:1-49,b:173-229 [126193]
    12. 2a68
      automatically matched to d1iw7a1
      complexed with mg, rbt, zn
      1. region k:1-49,k:173-229 [126201]
    13. 2a68
      automatically matched to d1iw7a1
      complexed with mg, rbt, zn
      1. region l:1-49,l:173-229 [126203]
    14. 2be5
      automatically matched to d1iw7a1
      complexed with mg, tgt, zn
      1. region a:1-49,a:173-229 [128351]
    15. 2be5
      automatically matched to d1iw7a1
      complexed with mg, tgt, zn
      1. region b:1-49,b:173-229 [128353]
    16. 2be5
      automatically matched to d1iw7a1
      complexed with mg, tgt, zn
      1. region k:1-49,k:173-229 [128361]
    17. 2be5
      automatically matched to d1iw7a1
      complexed with mg, tgt, zn
      1. region l:1-49,l:173-229 [128363]
    18. 1iw7
      complexed with mg, pb
      1. region a:1-49,a:173-229 [71470]
      2. region b:1-49,b:173-229 [71472]
      3. region k:1-49,k:173-229 [71478]
      4. region l:1-49,l:173-229 [71480]
    19. 2a6e
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region a:1-49,a:173-229 [126240]
    20. 2a6e
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region b:1-49,b:173-229 [126242]
    21. 2a6e
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region k:1-49,k:173-229 [126250]
    22. 2a6e
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region l:1-49,l:173-229 [126252]
    23. 1zyr
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region a:1-49,a:173-229 [125849]
    24. 1zyr
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region b:1-49,b:173-229 [125851]
    25. 1zyr
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region k:1-49,k:173-229 [125859]
    26. 1zyr
      automatically matched to d1iw7a1
      complexed with mg, std, zn
      1. region l:1-49,l:173-229 [125861]
    27. 2cw0
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region a:1-49,a:173-229 [130898]
    28. 2cw0
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region b:1-49,b:173-229 [130900]
    29. 2cw0
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region k:1-49,k:173-229 [130908]
    30. 2cw0
      automatically matched to d1iw7a1
      complexed with mg, zn
      1. region l:1-49,l:173-229 [130910]
2. RPB3 [64315]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64316] (25)
    SQ P16370; part of multichain biological unit
    1. 1twf
      complexed with mn, utp, zn
      1. region c:3-41,c:173-268 [112727]
    2. 1i50
      complexed with mn, zn
      1. region c:3-41,c:173-268 [61756]
    3. 1k83
      complexed with ilx, mn, trx, zn
      1. region c:3-41,c:173-268 [68277]
    4. 1i3q
      complexed with mg, zn
      1. region c:3-41,c:173-268 [61609]
    5. 2nvq
      automatically matched to d1i3qc1
      complexed with dut, mg, zn
      1. region c:3-37,c:173-268 [138636]
    6. 1twc
      complexed with gtp, mn, zn
      1. region c:3-41,c:173-268 [112713]
    7. 1twa
      complexed with atp, mn, zn
      1. region c:3-41,c:173-268 [112698]
    8. 1i6h
      complexed with mg, zn
      1. region c:3-41,c:173-268 [61833]
    9. 1twh
      complexed with atp, mn, zn
      1. region c:3-41,c:173-268 [112753]
    10. 1twg
      complexed with ctp, mn, zn
      1. region c:3-41,c:173-268 [112740]
    11. 2nvy
      automatically matched to d1i3qc1
      complexed with mn, zn
      1. region c:3-37,c:173-268 [138682]
    12. 2e2i
      automatically matched to d1i3qc1
      complexed with dgt, mg, zn
      1. region c:3-37,c:173-268 [131996]
    13. 2e2j
      automatically matched to d1i3qc1
      complexed with g2p, mg, zn
      1. region c:3-37,c:173-268 [132009]
    14. 2b63
      automatically matched to d1i3qc1
      complexed with 5bu, mg, zn
      1. region c:3-37,c:173-268 [127919]
    15. 2ja7
      automatically matched to d1i3qc1
      complexed with bru, mg, tt, zn
      1. region c:3-37,c:173-268 [138192]
    16. 2ja7
      automatically matched to d1i3qc1
      complexed with bru, mg, tt, zn
      1. region o:3-37,o:173-268 [138208]
    17. 2nvx
      automatically matched to d1i3qc1
      complexed with dut, mg, zn
      1. region c:3-37,c:173-268 [138669]
    18. 2nvt
      automatically matched to d1i3qc1
      complexed with g2p, mg, zn
      1. region c:3-37,c:173-268 [138649]
    19. 2ja5
      automatically matched to d1i3qc1
      complexed with bru, mg, zn
      1. region c:3-37,c:173-268 [138160]
    20. 2ja8
      automatically matched to d1i3qc1
      complexed with bru, mg, tt, zn
      1. region c:3-37,c:173-268 [138224]
    21. 2b8k
      automatically matched to d1i3qc1
      complexed with zn
      1. region c:3-37,c:173-268 [128078]
    22. 2ja6
      automatically matched to d1i3qc1
      complexed with bru, mg, tt, zn
      1. region c:3-37,c:173-268 [138176]
    23. 2yu9
      automatically matched to d1i3qc1
      complexed with mg, utp, zn
      1. region c:3-37,c:173-268 [140066]
    24. 2e2h
      automatically matched to d1i3qc1
      complexed with gtp, mg, zn
      1. region c:3-37,c:173-268 [131983]
    25. 2nvz
      automatically matched to d1i3qc1
      complexed with mg, utp, zn
      1. region c:3-37,c:173-268 [138695]