Structural Classification of Proteins
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Family: RBP11/RpoL

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: DCoH-like [55247]
    beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
  4. Superfamily: RBP11-like subunits of RNA polymerase [55257]
    form homo and heterodimers
    link to SUPERFAMILY database - Superfamily
  5. Family: RBP11/RpoL [64311]

Protein Domains:

  1. RPB11 [64312]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64313] (25)
      SQ P38902; part of multichain biological unit
      1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. chain k [112736] picpiclink
      2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. chain k [61765] picpiclink
      3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. chain k [68286] picpiclink
      4. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain k [61618] picpiclink
      5. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with dut, mg, zn
        1. region k:1-114 [138645] picpiclink
      6. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. chain k [112722] picpiclink
      7. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain k [112707] picpiclink
      8. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain k [61842] picpiclink
      9. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain k [112762] picpiclink
      10. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. chain k [112749] picpiclink
      11. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with mn, zn
        1. region k:1-114 [138691] picpiclink
      12. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with dgt, mg, zn
        1. region k:1-114 [132005] picpiclink
      13. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with g2p, mg, zn
        1. region k:1-114 [132018] picpiclink
      14. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with 5bu, mg, zn
        1. region k:1-114 [127930] picpiclink
      15. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with bru, mg, tt, zn
        1. region k:1-114 [138204] picpiclink
      16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with bru, mg, tt, zn
        1. region w:1-114 [138220] picpiclink
      17. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with dut, mg, zn
        1. region k:1-114 [138678] picpiclink
      18. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with g2p, mg, zn
        1. region k:1-114 [138658] picpiclink
      19. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with bru, mg, zn
        1. region k:1-114 [138172] picpiclink
      20. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with bru, mg, tt, zn
        1. region k:1-114 [138236] picpiclink
      21. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with zn
        1. region k:1-114 [128090] picpiclink
      22. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with bru, mg, tt, zn
        1. region k:1-114 [138188] picpiclink
      23. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with mg, utp, zn
        1. region k:1-114 [140075] picpiclink
      24. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with gtp, mg, zn
        1. region k:1-114 [131992] picpiclink
      25. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qk_
        complexed with mg, utp, zn
        1. region k:1-114 [138704] picpiclink
  2. DNA-directed RNA polymerase subunit L, RpoL [118020]
    1. Thermoplasma acidophilum [TaxId: 2303] [118021] (1)
      SQ Q9HIC5
      1. 1xpp picpic
        Structural genomics target
        complexed with acy, fmt, scn
        1. chain a [115768] picpiclink
        2. chain b [115769] picpiclink
        3. chain c [115770] picpiclink
        4. chain d [115771] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk