Family: RNA polymerase alpha subunit dimerisation domain

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: DCoH-like [55247]
   beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
4. Superfamily: RBP11-like subunits of RNA polymerase [55257]
   form homo and heterodimers
   uperfamily
5. Family: RNA polymerase alpha subunit dimerisation domain [55258]

Protein Domains:

1. RNA polymerase alpha [55259]
   1. Escherichia coli [TaxId: 562] [55260] (1)
      1. 1bdf
         mutant
         1. region a:2-52,a:179-232 [39727]
         2. region b:1-52,b:179-235 [39728]
         3. region c:1-52,c:179-235 [39729]
         4. region d:1-52,d:179-235 [39730]
   2. Thermus aquaticus [TaxId: 271] [64314] (7)
      1. 1ynj
         automatically matched to d1i6vb1
         complexed with srn, zn
         1. region a:6-49,a:173-231 [123737]
      2. 1ynj
         automatically matched to d1i6vb1
         complexed with srn, zn
         1. region b:6-49,b:173-228 [123739]
      3. 1i6v
         complexed with mg, rfp, zn
         1. region a:6-49,a:173-229 [61852]
         2. region b:3-49,b:173-232 [61854]
      4. 1ynn
         automatically matched to d1i6vb1
         complexed with rfp, zn
         1. region a:6-49,a:173-231 [123742]
      5. 1ynn
         automatically matched to d1i6vb1
         complexed with rfp, zn
         1. region b:6-49,b:173-228 [123744]
      6. 2gho
         automatically matched to d1i6vb1
         1. region a:6-49,a:173-231 [135180]
      7. 2gho
         automatically matched to d1i6vb1
         1. region b:6-49,b:173-228 [135182]
   3. Thermus thermophilus [TaxId: 274] [75478] (30)
      SQ Q9Z9H6; part of multichain biological unit
      1. 1smy
         complexed with g4p, mg, zn
         1. region a:1-49,a:173-229 [105774]
         2. region b:1-49,b:173-229 [105776]
         3. region k:1-49,k:173-229 [105784]
         4. region l:1-49,l:173-229 [105786]
      2. 2a6h
         automatically matched to d1iw7a1
         complexed with mg, std, zn
         1. region a:1-49,a:173-229 [126260]
      3. 2a6h
         automatically matched to d1iw7a1
         complexed with mg, std, zn
         1. region b:1-49,b:173-229 [126262]
      4. 2a6h
         automatically matched to d1iw7a1
         complexed with mg, std, zn
         1. region k:1-49,k:173-229 [126270]
      5. 2a6h
         automatically matched to d1iw7a1
         complexed with mg, std, zn
         1. region l:1-49,l:173-229 [126272]
      6. 2a69
         automatically matched to d1iw7a1
         complexed with mg, rpt, zn
         1. region a:1-49,a:173-229 [126211]
      7. 2a69
         automatically matched to d1iw7a1
         complexed with mg, rpt, zn
         1. region b:1-49,b:173-229 [126213]
      8. 2a69
         automatically matched to d1iw7a1
         complexed with mg, rpt, zn
         1. region k:1-49,k:173-229 [126221]
      9. 2a69
         automatically matched to d1iw7a1
         complexed with mg, rpt, zn
         1. region l:1-49,l:173-229 [126223]
      10. 2a68
          automatically matched to d1iw7a1
          complexed with mg, rbt, zn
          1. region a:1-49,a:173-229 [126191]
      11. 2a68
          automatically matched to d1iw7a1
          complexed with mg, rbt, zn
          1. region b:1-49,b:173-229 [126193]
      12. 2a68
          automatically matched to d1iw7a1
          complexed with mg, rbt, zn
          1. region k:1-49,k:173-229 [126201]
      13. 2a68
          automatically matched to d1iw7a1
          complexed with mg, rbt, zn
          1. region l:1-49,l:173-229 [126203]
      14. 2be5
          automatically matched to d1iw7a1
          complexed with mg, tgt, zn
          1. region a:1-49,a:173-229 [128351]
      15. 2be5
          automatically matched to d1iw7a1
          complexed with mg, tgt, zn
          1. region b:1-49,b:173-229 [128353]
      16. 2be5
          automatically matched to d1iw7a1
          complexed with mg, tgt, zn
          1. region k:1-49,k:173-229 [128361]
      17. 2be5
          automatically matched to d1iw7a1
          complexed with mg, tgt, zn
          1. region l:1-49,l:173-229 [128363]
      18. 1iw7
          complexed with mg, pb
          1. region a:1-49,a:173-229 [71470]
          2. region b:1-49,b:173-229 [71472]
          3. region k:1-49,k:173-229 [71478]
          4. region l:1-49,l:173-229 [71480]
      19. 2a6e
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region a:1-49,a:173-229 [126240]
      20. 2a6e
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region b:1-49,b:173-229 [126242]
      21. 2a6e
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region k:1-49,k:173-229 [126250]
      22. 2a6e
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region l:1-49,l:173-229 [126252]
      23. 1zyr
          automatically matched to d1iw7a1
          complexed with mg, std, zn
          1. region a:1-49,a:173-229 [125849]
      24. 1zyr
          automatically matched to d1iw7a1
          complexed with mg, std, zn
          1. region b:1-49,b:173-229 [125851]
      25. 1zyr
          automatically matched to d1iw7a1
          complexed with mg, std, zn
          1. region k:1-49,k:173-229 [125859]
      26. 1zyr
          automatically matched to d1iw7a1
          complexed with mg, std, zn
          1. region l:1-49,l:173-229 [125861]
      27. 2cw0
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region a:1-49,a:173-229 [130898]
      28. 2cw0
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region b:1-49,b:173-229 [130900]
      29. 2cw0
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region k:1-49,k:173-229 [130908]
      30. 2cw0
          automatically matched to d1iw7a1
          complexed with mg, zn
          1. region l:1-49,l:173-229 [130910]
2. RPB3 [64315]
   1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64316] (25)
      SQ P16370; part of multichain biological unit
      1. 1twf
         complexed with mn, utp, zn
         1. region c:3-41,c:173-268 [112727]
      2. 1i50
         complexed with mn, zn
         1. region c:3-41,c:173-268 [61756]
      3. 1k83
         complexed with ilx, mn, trx, zn
         1. region c:3-41,c:173-268 [68277]
      4. 1i3q
         complexed with mg, zn
         1. region c:3-41,c:173-268 [61609]
      5. 2nvq
         automatically matched to d1i3qc1
         complexed with dut, mg, zn
         1. region c:3-37,c:173-268 [138636]
      6. 1twc
         complexed with gtp, mn, zn
         1. region c:3-41,c:173-268 [112713]
      7. 1twa
         complexed with atp, mn, zn
         1. region c:3-41,c:173-268 [112698]
      8. 1i6h
         complexed with mg, zn
         1. region c:3-41,c:173-268 [61833]
      9. 1twh
         complexed with atp, mn, zn
         1. region c:3-41,c:173-268 [112753]
      10. 1twg
          complexed with ctp, mn, zn
          1. region c:3-41,c:173-268 [112740]
      11. 2nvy
          automatically matched to d1i3qc1
          complexed with mn, zn
          1. region c:3-37,c:173-268 [138682]
      12. 2e2i
          automatically matched to d1i3qc1
          complexed with dgt, mg, zn
          1. region c:3-37,c:173-268 [131996]
      13. 2e2j
          automatically matched to d1i3qc1
          complexed with g2p, mg, zn
          1. region c:3-37,c:173-268 [132009]
      14. 2b63
          automatically matched to d1i3qc1
          complexed with 5bu, mg, zn
          1. region c:3-37,c:173-268 [127919]
      15. 2ja7
          automatically matched to d1i3qc1
          complexed with bru, mg, tt, zn
          1. region c:3-37,c:173-268 [138192]
      16. 2ja7
          automatically matched to d1i3qc1
          complexed with bru, mg, tt, zn
          1. region o:3-37,o:173-268 [138208]
      17. 2nvx
          automatically matched to d1i3qc1
          complexed with dut, mg, zn
          1. region c:3-37,c:173-268 [138669]
      18. 2nvt
          automatically matched to d1i3qc1
          complexed with g2p, mg, zn
          1. region c:3-37,c:173-268 [138649]
      19. 2ja5
          automatically matched to d1i3qc1
          complexed with bru, mg, zn
          1. region c:3-37,c:173-268 [138160]
      20. 2ja8
          automatically matched to d1i3qc1
          complexed with bru, mg, tt, zn
          1. region c:3-37,c:173-268 [138224]
      21. 2b8k
          automatically matched to d1i3qc1
          complexed with zn
          1. region c:3-37,c:173-268 [128078]
      22. 2ja6
          automatically matched to d1i3qc1
          complexed with bru, mg, tt, zn
          1. region c:3-37,c:173-268 [138176]
      23. 2yu9
          automatically matched to d1i3qc1
          complexed with mg, utp, zn
          1. region c:3-37,c:173-268 [140066]
      24. 2e2h
          automatically matched to d1i3qc1
          complexed with gtp, mg, zn
          1. region c:3-37,c:173-268 [131983]
      25. 2nvz
          automatically matched to d1i3qc1
          complexed with mg, utp, zn
          1. region c:3-37,c:173-268 [138695]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk