Structural Classification of Proteins

Family: Ribosomal protein L5

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: RL5-like [55281]
beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654
Superfamily: RL5-like [55282]
uperfamily
Family: Ribosomal protein L5 [55283]

Protein Domains:

Ribosomal protein L5 [55284]
synonym: 50S ribosomal protein L5p, HMAL5, HL13
1. Bacillus stearothermophilus [TaxId: 1422] [64317] (1)
  1. 1iq4
    mutant
    1. chain a [62641]
    2. chain b [62642]
2. Thermus thermophilus [TaxId: 274] [82718] (6)
  1. 1mji
    complex with a 5S rRNA fragment
    complexed with k, mg, mse
    1. chain a [79208]
    2. chain b [79209]
  2. 2j01
    automatically matched to d1mjia_
    1. region g:3-182 [145568]
  3. 2j03
    automatically matched to d1mjia_
    complexed with lys
    1. region g:3-182 [145595]
  4. 2hgq
    automatically matched to d1mjia_
    1. region g:3-182 [145341]
  5. 2hgj
    automatically matched to d1mjia_
    1. region g:3-182 [145309]
  6. 2hgu
    automatically matched to d1mjia_
    1. region g:3-182 [145373]
3. Archaeon Haloarcula marismortui [TaxId: 2238] [55285] (40)
  SQ P14124
  1. 1vqo
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3
    1. region d:10-174 [120365]
  2. 1vq8
    automatically matched to d1ffkd_
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
    1. region d:10-174 [120191]
  3. 1vqp
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, dcz, hfa, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
    1. region d:10-174 [120394]
  4. 1jj2
    complexed with cd, cl, k, mg, na
    1. chain d [63088]
  5. 1yhq
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3, zit; mutant
    1. region d:10-174 [123186]
  6. 1vql
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, tse, ur3
    1. region d:10-174 [120278]
  7. 1vqk
    automatically matched to d1ffkd_
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
    1. region d:10-174 [120249]
  8. 1s72
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
    1. chain d [105322]
  9. 1vqm
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
    1. region d:10-174 [120307]
  10. 1vqn
    automatically matched to d1ffkd_
    complexed with 1ma, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, ppu, psu, sr, ur3
    1. region d:10-174 [120336]
  11. 1yi2
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, ery, k, mg, na, omg, omu, psu, ur3; mutant
    1. region d:10-174 [123233]
  12. 1yij
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, tel, ur3; mutant
    1. region d:10-174 [123301]
  13. 1vq7
    automatically matched to d1ffkd_
    complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, pae, psu, ur3
    1. region d:10-174 [120162]
  14. 1vq4
    automatically matched to d1ffkd_
    complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, po2, psu, ur3
    1. region d:10-174 [120075]
  15. 2otl
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, gir, k, mg, na, omg, omu, psu, ur3
    1. region d:10-174 [139349]
  16. 1vq5
    automatically matched to d1ffkd_
    complexed with 1ma, 2op, 5aa, cd, cl, dcz, k, mg, na, omg, omu, po2, psu, ur3
    1. region d:10-174 [120104]
  17. 1vq9
    automatically matched to d1ffkd_
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
    1. region d:10-174 [120220]
  18. 1m90
    complexed with aca, cd, cl, k, mg, na, pha, sps
    1. chain f [78843]
  19. 1yit
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3, vir, vrs
    1. region d:10-174 [123344]
  20. 1vq6
    automatically matched to d1ffkd_
    complexed with 1ma, 5aa, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, psu, ur3
    1. region d:10-174 [120133]
  21. 2otj
    automatically matched to d1ffkd_
    complexed with 13t, 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
    1. region d:10-174 [139320]
  22. 1yjw
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, syb, ur3; mutant
    1. region d:10-174 [123468]
  23. 1nji
    complexed with cd, cl, clm, k, mg, na; mutant
    1. chain f [85796]
  24. 1kqs
    complexed with aca, btn, cd, cl, k, mg, na, pha, ppu
    1. chain d [68818]
  25. 1kc8
    complexed with bls, cd, cl, k, mg, na
    1. chain f [84360]
  26. 1yjn
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, cly, k, mg, na, omg, omu, psu, ur3; mutant
    1. region d:10-174 [123436]
  27. 1n8r
    complexed with cd, cl, k, mg, na, vir; mutant
    1. chain f [85432]
  28. 1k73
    complexed with anm, cd, cl, k, mg, na
    1. chain f [84321]
  29. 1yj9
    automatically matched to d1ffkd_
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3; mutant
    1. region d:10-174 [123397]
  30. 1qvg
    complexed with cd, cl, k, mg, na
    1. chain d [96395]
  31. 1q82
    complexed with cd, cl, k, mg, na, ppu
    1. chain f [96132]
  32. 1qvf
    complexed with cd, cl, k, mg, na
    1. chain d [96365]
  33. 1q81
    complexed with cd, cl, k, mg, na, ppu
    1. chain f [96102]
  34. 1k9m
    complexed with cd, cl, k, mg, na, tyk
    1. chain f [72216]
  35. 1kd1
    complexed with cd, cl, k, mg, na, spr
    1. chain f [72327]
  36. 1k8a
    complexed with cai, cd, cl, k, mg, na
    1. chain f [72149]
  37. 1m1k
    complexed with cd, cl, k, mg, na, zit
    1. chain f [74387]
  38. 1q86
    complexed with cd, cl, k, mg, na, pha
    1. chain f [96170]
  39. 1q7y
    complexed with cd, cl, k, mg, na, po4, puy
    1. chain f [96068]
  40. 1ffk
    complexed with cd, k, mo3; mutant
    1. chain d [39750]
4. Deinococcus radiodurans [TaxId: 1299] [160487] (6)
  SQ Q9RXJ0 3-179
  1. 2zjr
    Representative structure
    complexed with mg
    1. region d:3-179 [154557]
  2. 1xbp
    automatically matched to 2ZJR D:3-179
    complexed with mul
    1. region d:3-179 [145869]
  3. 2zjq
    automatically matched to 2ZJR D:3-179
    1. region d:3-179 [154526]
  4. 3cf5
    automatically matched to 2ZJR D:3-179
    complexed with mg, txx
    1. region d:3-179 [156542]
  5. 2zjp
    automatically matched to 2ZJR D:3-179
    complexed with mg, nsh, zn
    1. region d:3-179 [154494]
  6. 3dll
    automatically matched to 2ZJR D:3-179
    complexed with mg, zld, zn
    1. region d:3-179 [157781]
5. Escherichia coli [TaxId: 562] [160488] (29)
  SQ P62399 1-178
  1. 2gyc
    automatically matched to 2AW4 F:1-178
    1. region d:2-178 [145264]
  2. 2gya
    automatically matched to 2AW4 F:1-178
    1. region d:2-178 [145242]
  3. 2qam
    automatically matched to 2AW4 F:1-178
    complexed with mg, nmy, zn
    1. region f:1-178 [150243]
  4. 2qao
    automatically matched to 2AW4 F:1-178
    complexed with mg, nmy, zn
    1. region f:1-178 [150296]
  5. 2i2t
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [145445]
  6. 2i2v
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [145487]
  7. 2qbe
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [150463]
  8. 2qbg
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [150517]
  9. 2qoz
    automatically matched to 2AW4 F:1-178
    complexed with mg, nmy, zn
    1. region f:1-178 [151119]
  10. 2qp1
    automatically matched to 2AW4 F:1-178
    complexed with mg, nmy, zn
    1. region f:1-178 [151172]
  11. 3df2
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [157632]
  12. 3df4
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [157686]
  13. 2qba
    automatically matched to 2AW4 F:1-178
    complexed with lll, mg, zn
    1. region f:1-178 [150356]
  14. 2qbc
    automatically matched to 2AW4 F:1-178
    complexed with lll, mg, zn
    1. region f:1-178 [150409]
  15. 2qbi
    automatically matched to 2AW4 F:1-178
    complexed with lll, mg, zn
    1. region f:1-178 [150571]
  16. 2qbk
    automatically matched to 2AW4 F:1-178
    complexed with lll, mg, zn
    1. region f:1-178 [150625]
  17. 2qov
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [151013]
  18. 2qox
    automatically matched to 2AW4 F:1-178
    complexed with mg, zn
    1. region f:1-178 [151066]
  19. 1vs6
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [144460]
  20. 1vs8
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [144501]
  21. 2aw4
    Representative structure
    complexed with mg
    1. region f:1-178 [144869]
  22. 2awb
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [144910]
  23. 2z4l
    automatically matched to 2AW4 F:1-178
    complexed with mg, par, zn
    1. region f:1-178 [154081]
  24. 2z4n
    automatically matched to 2AW4 F:1-178
    complexed with mg, par, zn
    1. region f:1-178 [154135]
  25. 2vhm
    automatically matched to 2AW4 F:1-178
    complexed with mg; mutant
    1. region f:1-178 [153066]
  26. 2vhn
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [153098]
  27. 2rdo
    automatically matched to 2AW4 F:1-178
    1. region f:1-178 [151943]
  28. 2j28
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [145626]
  29. 3bbx
    automatically matched to 2AW4 F:1-178
    complexed with mg
    1. region f:1-178 [155102]