Structural Classification of Proteins
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Superfamily: RPB5-like RNA polymerase subunit

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: RPB5-like RNA polymerase subunit [55286]
    core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta
  4. Superfamily: RPB5-like RNA polymerase subunit [55287]
    link to SUPERFAMILY database - Superfamily

Families:

  1. RPB5 [55288] (3)
    1. RNA polymerase subunit RBP5 (RNA polymerase subunit H) [55289]
      1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55290] (1)
        1. 1eik picpic
          1. chain a [39751] picpiclink
      2. Archaeon Methanococcus jannaschii [TaxId: 2190] [55291] (1)
        1. 1hmj picpic
          probably incorrect structure
          1. chain a [39752] picpiclink
    2. Eukaryotic RPB5 C-terminal domain [55292]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55293] (26)
        SQ P20434; part of multichain biological unit
        1. 1dzf picpicxref
          1. region a:144-215 [39753] picpiclink
        2. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mn, utp, zn
          1. region e:144-215 [112730] picpiclink
        3. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mn, zn
          1. region e:144-215 [61759] picpiclink
        4. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ilx, mn, trx, zn
          1. region e:144-215 [68280] picpiclink
        5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. region e:144-215 [61612] picpiclink
        6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with dut, mg, zn
          1. region e:144-215 [138639] picpiclink
        7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with gtp, mn, zn
          1. region e:144-215 [112716] picpiclink
        8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with atp, mn, zn
          1. region e:144-215 [112701] picpiclink
        9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg, zn
          1. region e:144-215 [61836] picpiclink
        10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with atp, mn, zn
          1. region e:144-215 [112756] picpiclink
        11. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with ctp, mn, zn
          1. region e:144-215 [112743] picpiclink
        12. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with mn, zn
          1. region e:144-215 [138685] picpiclink
        13. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with dgt, mg, zn
          1. region e:144-215 [131999] picpiclink
        14. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with g2p, mg, zn
          1. region e:144-215 [132012] picpiclink
        15. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with 5bu, mg, zn
          1. region e:144-215 [127923] picpiclink
        16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with bru, mg, tt, zn
          1. region e:144-215 [138196] picpiclink
        17. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with bru, mg, tt, zn
          1. region q:144-215 [138212] picpiclink
        18. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with dut, mg, zn
          1. region e:144-215 [138672] picpiclink
        19. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with g2p, mg, zn
          1. region e:144-215 [138652] picpiclink
        20. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with bru, mg, zn
          1. region e:144-215 [138164] picpiclink
        21. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with bru, mg, tt, zn
          1. region e:144-215 [138228] picpiclink
        22. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with zn
          1. region e:144-215 [128082] picpiclink
        23. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with bru, mg, tt, zn
          1. region e:144-215 [138180] picpiclink
        24. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with mg, utp, zn
          1. region e:144-215 [140069] picpiclink
        25. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with gtp, mg, zn
          1. region e:144-215 [131986] picpiclink
        26. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1dzfa2
          complexed with mg, utp, zn
          1. region e:144-215 [138698] picpiclink

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site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk