Structural Classification of Proteins
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Family: YjgF/L-PSP

some members possess an endoribonuclease activity inhibiting mRNA translation

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Bacillus chorismate mutase-like [55297]
    core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest
  4. Superfamily: YjgF-like [55298]
    forms trimers with three closely packed beta-sheets; possibly related to the IspF (d.79.5) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)
    link to SUPERFAMILY database - Superfamily
  5. Family: YjgF/L-PSP [55299]
    some members possess an endoribonuclease activity inhibiting mRNA translation

Protein Domains:

  1. Conserved 'hypothetical' protein YjgF [55300]
    1. Escherichia coli [TaxId: 562] [55301] (1)
      1. 1qu9 picpic
        contains phosphorylated cysteine
        1. chain a [39755] picpiclink
        2. chain b [39756] picpiclink
        3. chain c [39757] picpiclink
    2. Haemophilus influenzae [TaxId: 727] [82719] (1)
      YjgF homologue HI0719
      1. 1j7h picpic
        1. chain a [77097] picpiclink
        2. chain b [77098] picpiclink
        3. chain c [77099] picpiclink
  2. Hypothetical protein YjgH [103075]
    1. Escherichia coli [TaxId: 562] [103076] (1)
      1. 1pf5 picpic
        structural genomics
        complexed with hg
        1. chain a [94604] picpiclink
  3. Purine regulatory protein YabJ [55302]
    1. Bacillus subtilis [TaxId: 1423] [55303] (1)
      1. 1qd9 picpic
        1. chain a [39758] picpiclink
        2. chain b [39759] picpiclink
        3. chain c [39760] picpiclink
    2. Clostridium thermocellum [TaxId: 1515] [118024] (1)
      SQ Q4CI45
      1. 1xrg picpic
        Structural genomics target
        complexed with unx
        1. chain a [115868] picpiclink
        2. chain b [115869] picpiclink
        3. chain c [115870] picpiclink
  4. Highdosage growth inhibitor YER057cp (YEO7_YEAST) [64319]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64320] (1)
      1. 1jd1 picpic
        1. chain a [62890] picpiclink
        2. chain b [62891] picpiclink
        3. chain c [62892] picpiclink
        4. chain d [62893] picpiclink
        5. chain e [62894] picpiclink
        6. chain f [62895] picpiclink
  5. 14.5 kda translational inhibitor protein, L-PSP [89979]
    mammalian tumor associated antigen UK114
    1. Human (Homo sapiens) [TaxId: 9606] [89980] (1)
      1. 1oni picpic
        complexed with bez
        1. chain a [87144] picpiclink
        2. chain b [87145] picpiclink
        3. chain c [87146] picpiclink
        4. chain d [87147] picpiclink
        5. chain e [87148] picpiclink
        6. chain f [87149] picpiclink
        7. chain g [87150] picpiclink
        8. chain h [87151] picpiclink
        9. chain i [87152] picpiclink
    2. Goat (Capra hircus) [TaxId: 9925] [103077] (1)
      1. 1nq3 picpic
        1. chain a [92039] picpiclink
        2. chain b [92040] picpiclink
        3. chain c [92041] picpiclink
        4. chain d [92042] picpiclink
        5. chain e [92043] picpiclink
        6. chain f [92044] picpiclink
    3. Rat (Rattus norvegicus) [TaxId: 10116] [103078] (1)
      Perchloric acid soluble protein
      1. 1qah picpic
        1. chain a [96338] picpiclink
        2. chain b [96339] picpiclink
  6. Hypothetical protein ST0811 [143521]
    1. Sulfolobus tokodaii [TaxId: 111955] [143522] (2)
      SQ Q973T6 1-124
      1. 1x25 picpic
        1. region a:1-124 [121619] picpiclink
      2. 1x25 picpic
        automatically matched to 1X25 A:1-124
        1. region b:1-124 [121620] picpiclink
  7. Putative endonuclease APE1501 [143523]
    1. Aeropyrum pernix [TaxId: 56636] [143524] (1)
      SQ Q9YBU8 4-119
      1. 2cwj picpic
        1. region a:4-119 [130924] picpiclink
  8. Putative protein synthesis inhibitor TM0215 [143525]
    1. Thermotoga maritima [TaxId: 2336] [143526] (2)
      SQ Q9WY58 2-127
      1. 2b33 picpic
        complexed with ca, edo
        1. region a:2-127 [127765] picpiclink
      2. 2b33 picpic
        automatically matched to 2B33 A:2-127
        complexed with ca, edo
        1. region b:2-127 [127766] picpiclink
  9. Hypothetical protein SPy2060 [143527]
    1. Streptococcus pyogenes [TaxId: 1314] [143528] (12)
      SQ Q99XS4 3-122
      1. 2ewc picpic
        complexed with gol
        1. region a:3-122 [132454] picpiclink
      2. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region b:3-122 [132455] picpiclink
      3. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region c:3-122 [132456] picpiclink
      4. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region d:3-121 [132457] picpiclink
      5. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region e:3-122 [132458] picpiclink
      6. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region f:3-122 [132459] picpiclink
      7. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region g:3-122 [132460] picpiclink
      8. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region h:3-122 [132461] picpiclink
      9. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region i:3-122 [132462] picpiclink
      10. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region j:3-122 [132463] picpiclink
      11. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region k:3-122 [132464] picpiclink
      12. 2ewc picpic
        automatically matched to 2EWC A:3-122
        complexed with gol
        1. region l:3-122 [132465] picpiclink
  10. Putative translation intiation inhibitor TTHA0137 [143529]
    1. Thermus thermophilus [TaxId: 274] [143530] (13)
      SQ Q5SM06 1-124
      1. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region a:1-124 [130871] picpiclink
      2. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region b:1-124 [130872] picpiclink
      3. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region c:1-124 [130873] picpiclink
      4. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region d:1-124 [130874] picpiclink
      5. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region e:1-124 [130875] picpiclink
      6. 2cvl picpic
        automatically matched to 2CSL A:1-124
        1. region f:1-124 [130876] picpiclink
      7. 2cw4 picpic
        automatically matched to 2CSL A:1-124
        1. region a:1-124 [130919] picpiclink
      8. 2csl picpic
        1. region a:1-124 [130772] picpiclink
      9. 2csl picpic
        automatically matched to 2CSL A:1-124
        1. region b:1-124 [130773] picpiclink
      10. 2csl picpic
        automatically matched to 2CSL A:1-124
        1. region c:1-124 [130774] picpiclink
      11. 2csl picpic
        automatically matched to 2CSL A:1-124
        1. region d:1-124 [130775] picpiclink
      12. 2csl picpic
        automatically matched to 2CSL A:1-124
        1. region e:1-124 [130776] picpiclink
      13. 2csl picpic
        automatically matched to 2CSL A:1-124
        1. region f:1-124 [130777] picpiclink
  11. Hypothetical protein SO1960 [160498]
    1. Shewanella oneidensis [TaxId: 70863] [160499] (3)
      SQ Q8EFL1 2-153
      1. 2otm picpic
        complexed with act, ca, gol, na
        1. region a:2-153 [149012] picpiclink
      2. 2otm picpic
        automatically matched to 2OTM A:2-153
        complexed with act, ca, gol, na
        1. region b:2-153 [149013] picpiclink
      3. 2otm picpic
        automatically matched to 2OTM A:2-153
        complexed with act, ca, gol, na
        1. region c:3-153 [149014] picpiclink

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site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk