Structural Classification of Proteins
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Fold: N domain of copper amine oxidase-like

alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: N domain of copper amine oxidase-like [55382]
    alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet

Superfamilies:

  1. Copper amine oxidase, domain N [55383] (1)
    link to SUPERFAMILY database - Superfamily
    1. Copper amine oxidase, domain N [55384] (1)
      1. Copper amine oxidase, domain N [55385]
        non-conserved N-terminal domain
        1. Escherichia coli [TaxId: 562] [55386] (11)
          1. 1d6z picpicxrefxref
            1. region a:7-90 [40007] picpiclink
            2. region b:6-90 [40008] picpiclink
          2. 1oac picpicxrefxref
            complexed with ca, cu
            1. region a:5-90 [40003] picpiclink
            2. region b:5-90 [40004] picpiclink
          3. 1qak picpicxrefxref
            complexed with ca, cu; mutant
            1. region a:6-90 [40005] picpiclink
            2. region b:6-90 [40006] picpiclink
          4. 1dyu picpicxrefxref
            complexed with ca, cu; mutant
            1. region a:7-90 [40009] picpiclink
            2. region b:6-90 [40010] picpiclink
          5. 1d6u picpicxrefxref
            1. region a:7-90 [40015] picpiclink
            2. region b:6-90 [40016] picpiclink
          6. 1d6y picpicxrefxref
            1. region a:7-90 [40017] picpiclink
            2. region b:6-90 [40018] picpiclink
          7. 1jrq picpicxrefxref
            complexed with ca, cu; mutant
            1. region a:7-90 [67188] picpiclink
            2. region b:6-90 [67192] picpiclink
          8. 1qaf picpicxrefxref
            complexed with ca, cu, gol; mutant
            1. region a:7-90 [40013] picpiclink
            2. region b:6-90 [40014] picpiclink
          9. 1spu picpicxrefxref
            complexed with ca, cu
            1. region a:7-90 [40011] picpiclink
            2. region b:6-90 [40012] picpiclink
          10. 1lvn picpicxrefxref
            complexed with ca, cu, tyt
            1. region a:7-90 [91141] picpiclink
            2. region b:6-90 [91145] picpiclink
          11. 1qal picpicxrefxref
            complexed with ca, cu; mutant
            1. region a:7-90 [40019] picpiclink
            2. region b:6-90 [40020] picpiclink
  2. Frataxin/Nqo15-like [55387] (2)
    link to SUPERFAMILY database - Superfamily
    1. Frataxin-like [55388] (3)
      iron homeostasis proteins
      1. C-terminal domain of frataxin [55389]
        protein responsible for Friedreich ataxia
        1. Human (Homo sapiens) [TaxId: 9606] [55390] (2)
          1. 1ekg picpic
            1. chain a [40021] picpiclink
          2. 1ly7 picpic
            1. chain a [74339] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [143571] (2)
          SQ Q07540 52-174! SQ Q07540 61-172
          1. 2fql picpic
            mutant
            1. region a:61-172 [133956] picpiclink
          2. 2ga5 picpic
            1. region a:1-123 [134860] picpiclink
      2. CyaY [55391]
        1. Escherichia coli [TaxId: 562] [55392] (4)
          SQ P27838
          1. 1ew4 picpic
            1. chain a [40023] picpiclink
          2. 2p1x picpic
            automatically matched to d1ew4a_
            complexed with eu3
            1. region a:1-106 [149168] picpiclink
          3. 2eff picpic
            automatically matched to d1ew4a_
            complexed with co
            1. region a:1-106 [146813] picpiclink
          4. 1soy picpic
            1. chain a [112107] picpiclink
    2. Nqo15-like [143572] (1)
      overall structural similarity to the frataxin-like family
      1. NADH-quinone oxidoreductase subunit 15, Nqo15 [143573]
        1. Thermus thermophilus [TaxId: 274] [143574] (4)
          SQ Q5SKZ7 3-129
          1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with fes, fmn, sf4
            1. region 7:3-129 [134132] picpiclink
          2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 7:3-129
            complexed with fes, fmn, sf4
            1. region h:3-129 [134146] picpiclink
          3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 7:3-129
            complexed with fes, fmn, sf4
            1. region q:3-129 [134159] picpiclink
          4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 7:3-129
            complexed with fes, fmn, sf4
            1. region z:3-129 [134172] picpiclink
  3. Hypothetical protein c14orf129, hspc210 [103107] (1)
    link to SUPERFAMILY database - Superfamily
    1. Hypothetical protein c14orf129, hspc210 [103108] (1)
      Pfam 05303
      1. Hypothetical protein c14orf129, hspc210 [103109]
        1. Human (Homo sapiens) [TaxId: 9606] [103110] (1)
          1. 1sgo picpic
            structural genomics; NESG target HR969
            1. chain a [98857] picpiclink
  4. GAS2 domain-like [143575] (1)
    this superfamily may include the most C-terminal domain of IBP39 (scop_fa 103410); the preceeding (middle) domain of IBP39 may be split and reassigned to the EF-hand superfamily (scop_sf 47473)
    link to SUPERFAMILY database - Superfamily
    1. GAS2 domain [143576] (1)
      Pfam 02187
      1. Growth-arrest-specific protein 2, GAS2 [143577]
        1. Mouse (Mus musculus) [TaxId: 10090] [143578] (1)
          SQ P11862 200-284
          1. 1v5r picpic
            complexed with zn
            1. region a:7-91 [119854] picpiclink
  5. GK1464-like [143579] (1)
    dimer; pseudo barrel; the true dimeric barrel formation requires swapping of the C-ternimal beta-alpha units
    link to SUPERFAMILY database - Superfamily
    1. GK1464-like [143580] (1)
      1. Hypothetical protein, GK1464 ortholog [143581]
        MCSG target ID: APC35702
        1. Bacillus stearothermophilus [TaxId: 1422] [143582] (2)
          SQ Q5KZY7 1-100
          1. 1ylx picpic
            1. region a:1-100 [123677] picpiclink
          2. 1ylx picpic
            automatically matched to 1YLX A:1-100
            1. region b:1-100 [123678] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk