Structural Classification of Proteins
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Fold: N domain of copper amine oxidase-like

alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: N domain of copper amine oxidase-like [55382]
    alpha-beta(5)-alpha; 2 layers: alpha/beta; meander antiparallel sheet

Superfamilies:

  1. Copper amine oxidase, domain N [55383] (1)
    link to SUPERFAMILY database - Superfamily
    1. Copper amine oxidase, domain N [55384] (1)
      1. Copper amine oxidase, domain N [55385]
        non-conserved N-terminal domain
        1. Escherichia coli [TaxId: 562] [55386] (11) picpic
  2. Frataxin/Nqo15-like [55387] (2)
    link to SUPERFAMILY database - Superfamily
    1. Frataxin-like [55388] (3)
      iron homeostasis proteins
      1. C-terminal domain of frataxin [55389]
        protein responsible for Friedreich ataxia
        1. Human (Homo sapiens) [TaxId: 9606] [55390] (2) picpic
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [143571] (2) picpic
          SQ Q07540 52-174! SQ Q07540 61-172
      2. CyaY [55391]
        1. Escherichia coli [TaxId: 562] [55392] (4) picpic
          SQ P27838
    2. Nqo15-like [143572] (1)
      overall structural similarity to the frataxin-like family
      1. NADH-quinone oxidoreductase subunit 15, Nqo15 [143573]
        1. Thermus thermophilus [TaxId: 274] [143574] (4) picpic
          SQ Q5SKZ7 3-129
  3. Hypothetical protein c14orf129, hspc210 [103107] (1)
    link to SUPERFAMILY database - Superfamily
    1. Hypothetical protein c14orf129, hspc210 [103108] (1)
      Pfam 05303
      1. Hypothetical protein c14orf129, hspc210 [103109]
        1. Human (Homo sapiens) [TaxId: 9606] [103110] (1) picpic
  4. GAS2 domain-like [143575] (1)
    this superfamily may include the most C-terminal domain of IBP39 (scop_fa 103410); the preceeding (middle) domain of IBP39 may be split and reassigned to the EF-hand superfamily (scop_sf 47473)
    link to SUPERFAMILY database - Superfamily
    1. GAS2 domain [143576] (1)
      Pfam 02187
      1. Growth-arrest-specific protein 2, GAS2 [143577]
        1. Mouse (Mus musculus) [TaxId: 10090] [143578] (1) picpic
          SQ P11862 200-284
  5. GK1464-like [143579] (1)
    dimer; pseudo barrel; the true dimeric barrel formation requires swapping of the C-ternimal beta-alpha units
    link to SUPERFAMILY database - Superfamily
    1. GK1464-like [143580] (1)
      1. Hypothetical protein, GK1464 ortholog [143581]
        MCSG target ID: APC35702
        1. Bacillus stearothermophilus [TaxId: 1422] [143582] (2) picpic
          SQ Q5KZY7 1-100
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk