Family: RNA bacteriophage capsid protein

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: RNA bacteriophage capsid protein [55404]
   6-standed beta-sheet followed with 2 helices; meander
4. Superfamily: RNA bacteriophage capsid protein [55405]
   uperfamily
5. Family: RNA bacteriophage capsid protein [55406]

Protein Domains:

1. MS2 virus coat protein [55407]
   1. Bacteriophage MS2 [TaxId: 12022] [55408] (48)
      SQ P03612
      1. 2bu1
         automatically matched to d1dzsa_
         complexed with 5bu
         1. region a:1-129 [129164]
      2. 2bu1
         automatically matched to d1dzsa_
         complexed with 5bu
         1. region b:1-129 [129165]
      3. 2bu1
         automatically matched to d1dzsa_
         complexed with 5bu
         1. region c:1-129 [129166]
      4. 2c4q
         automatically matched to d1dzsa_
         complexed with pyo; mutant
         1. region a:1-129 [129842]
      5. 2c4q
         automatically matched to d1dzsa_
         complexed with pyo; mutant
         1. region b:1-129 [129843]
      6. 2c4q
         automatically matched to d1dzsa_
         complexed with pyo; mutant
         1. region c:1-129 [129844]
      7. 2izn
         automatically matched to d1dzsa_
         1. region a:1-129 [137823]
      8. 2izn
         automatically matched to d1dzsa_
         1. region b:1-129 [137824]
      9. 2izn
         automatically matched to d1dzsa_
         1. region c:1-129 [137825]
      10. 2c4z
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region a:1-129 [129867]
      11. 2c4z
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region b:1-129 [129868]
      12. 2c4z
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region c:1-129 [129869]
      13. 2c51
          automatically matched to d1dzsa_
          mutant
          1. region a:1-129 [129873]
      14. 2c51
          automatically matched to d1dzsa_
          mutant
          1. region b:1-129 [129874]
      15. 2c51
          automatically matched to d1dzsa_
          mutant
          1. region c:1-129 [129875]
      16. 2c4y
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region a:1-129 [129864]
      17. 2c4y
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region b:1-129 [129865]
      18. 2c4y
          automatically matched to d1dzsa_
          complexed with sur; mutant
          1. region c:1-129 [129866]
      19. 1zdh
          protein/RNA complex
          1. chain a [40043]
          2. chain b [40044]
          3. chain c [40045]
      20. 1mst
          mutant
          1. chain a [40055]
          2. chain b [40056]
          3. chain c [40057]
      21. 1msc
          mutant
          1. chain a [40039]
      22. 1zdi
          protein/RNA complex
          1. chain a [40052]
          2. chain b [40053]
          3. chain c [40054]
      23. 1bms
          mutant
          1. chain a [40082]
          2. chain b [40083]
          3. chain c [40084]
      24. 1zdj
          protein/RNA complex
          1. chain a [40064]
          2. chain b [40065]
          3. chain c [40066]
      25. 1aq3
          protein/RNA complex; mutant
          1. chain a [40079]
          2. chain b [40080]
          3. chain c [40081]
      26. 2c50
          automatically matched to d1dzsa_
          mutant
          1. region a:1-129 [129870]
      27. 2c50
          automatically matched to d1dzsa_
          mutant
          1. region b:1-129 [129871]
      28. 2c50
          automatically matched to d1dzsa_
          mutant
          1. region c:1-129 [129872]
      29. 2iz9
          automatically matched to d1dzsa_
          complexed with one
          1. region a:1-129 [137820]
      30. 2iz9
          automatically matched to d1dzsa_
          complexed with one
          1. region b:1-129 [137821]
      31. 2iz9
          automatically matched to d1dzsa_
          complexed with one
          1. region c:1-129 [137822]
      32. 1mvb
          mutant
          1. chain a [40070]
          2. chain b [40071]
          3. chain c [40072]
      33. 2ms2
          1. chain a [40049]
          2. chain b [40050]
          3. chain c [40051]
      34. 1mva
          mutant
          1. chain a [40088]
          2. chain b [40089]
          3. chain c [40090]
      35. 5msf
          protein/RNA complex
          1. chain a [40058]
          2. chain b [40059]
          3. chain c [40060]
      36. 6msf
          protein/RNA complex
          1. chain a [40067]
          2. chain b [40068]
          3. chain c [40069]
      37. 1zdk
          protein/RNA complex
          1. chain a [40085]
          2. chain b [40086]
          3. chain c [40087]
      38. 1aq4
          protein/RNA complex; mutant
          1. chain a [40091]
          2. chain b [40092]
          3. chain c [40093]
      39. 1u1y
          complexed with 2pr
          1. chain a [112965]
          2. chain b [112966]
          3. chain c [112967]
      40. 2izm
          automatically matched to d1aq4a_
          1. region a:1-129 [147842]
      41. 2izm
          automatically matched to d1aq4a_
          1. region b:1-129 [147843]
      42. 2izm
          automatically matched to d1aq4a_
          1. region c:1-129 [147844]
      43. 7msf
          protein/RNA complex
          1. chain a [40061]
          2. chain b [40062]
          3. chain c [40063]
      44. 2iz8
          automatically matched to d1dzsa_
          1. region a:1-129 [137817]
      45. 2iz8
          automatically matched to d1dzsa_
          1. region b:1-129 [137818]
      46. 2iz8
          automatically matched to d1dzsa_
          1. region c:1-129 [137819]
      47. 2vtu
          automatically matched to d1aq4a_
          1. region j:130-257 [153542]
      48. 2vtu
          automatically matched to d1aq4a_
          1. region l:130-257 [153543]
2. GA coat protein [55409]
   1. Bacteriophage GA [TaxId: 12018] [55410] (2)
      1. 1una
         1. chain a [40094]
         2. chain b [40095]
      2. 1gav
         contains 9 more identical chains denoted "a b c d e f g h i"
         1. chain a [40096]
         2. chain b [40097]
         3. chain c [40098]
         4. chain d [40099]
         5. chain e [40100]
         6. chain f [40101]
         7. chain g [40102]
         8. chain h [40103]
         9. chain i [40104]
         10. chain j [40105]
         11. chain k [40106]
         12. chain l [40107]
         13. chain m [40108]
         14. chain n [40109]
         15. chain o [40110]
         16. chain p [40111]
         17. chain q [40112]
         18. chain r [40113]
         19. chain s [40114]
         20. chain t [40115]
         21. chain u [40116]
         22. chain v [40117]
         23. chain w [40118]
         24. chain x [40119]
         25. chain y [40120]
         26. chain z [40121]
         27. chain 1 [40122]
         28. chain 2 [40123]
         29. chain 3 [40124]
         30. chain 4 [40125]
         31. chain 5 [40126]
         32. chain 6 [40127]
         33. chain 7 [40128]
         34. chain 8 [40129]
         35. chain 9 [40130]
         36. chain 0 [40131]
3. fr coat protein [55411]
   1. Bacteriophage FR [TaxId: 12017] [55412] (2)
      1. 1fr5
         mutant
         1. chain a [40135]
         2. chain b [40136]
         3. chain c [40137]
      2. 1frs
         1. chain a [40132]
         2. chain b [40133]
         3. chain c [40134]
4. Qbeta coat protein [55413]
   1. Bacteriophage Qbeta [TaxId: 39803] [55414] (1)
      1. 1qbe
         1. chain a [40138]
         2. chain b [40139]
         3. chain c [40140]
5. PP7 coat protein [55415]
   1. Bacteriophage PP7 [TaxId: 12023] [55416] (1)
      1. 1dwn
         1. chain a [40141]
         2. chain b [40142]
         3. chain c [40143]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk