Structural Classification of Proteins
home mail help root up expand collapse

Fold: CO dehydrogenase flavoprotein C-domain-like

core: beta(3,4)-alpha(3); alpha+beta sandwich

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: CO dehydrogenase flavoprotein C-domain-like [55423]
    core: beta(3,4)-alpha(3); alpha+beta sandwich

Superfamilies:

  1. FAD/NAD-linked reductases, dimerisation (C-terminal) domain [55424] (1)
    both first two domains are of same beta/beta/alpha fold
    link to SUPERFAMILY database - Superfamily
    1. FAD/NAD-linked reductases, dimerisation (C-terminal) domain [55425] (22)
      1. Glutathione reductase [55426]
        1. Human (Homo sapiens) [TaxId: 9606] [55427] (17)
          1. 3grs picpicxref
            complexed with fad
            1. region a:364-478 [40152] picpiclink
          2. 1dnc picpicxref
            complexed with fad, gtt, po4
            1. region a:364-478 [40153] picpiclink
          3. 1gsn picpicxref
            complexed with fad, gtt, po4
            1. region a:364-478 [40154] picpiclink
          4. 1xan picpicxref
            complexed with fad, hxp
            1. region a:364-478 [40156] picpiclink
          5. 1grb picpicxref
            complexed with fad, nad, ndp, po4
            1. region a:364-478 [40155] picpiclink
          6. 1gra picpicxref
            complexed with fad, gsh, ndp
            1. region a:364-478 [40157] picpiclink
          7. 1k4q picpicxref
            complexed with fad, niy
            1. region a:364-478 [68142] picpiclink
          8. 1gre picpicxref
            complexed with fad, gsh, po4
            1. region a:364-478 [40158] picpiclink
          9. 1grg picpicxref
            complexed with cec, fad, po4
            1. region a:364-478 [40159] picpiclink
          10. 1grf picpicxref
            complexed with cnm, fad, po4
            1. region a:364-478 [40160] picpiclink
          11. 1bwc picpicxref
            complexed with aj3, cl, fad
            1. region a:364-478 [40161] picpiclink
          12. 4gr1 picpicxref
            complexed with fad, po4, rgs
            1. region a:364-478 [40162] picpiclink
          13. 5grt picpicxref
            complexed with fad, ts4; mutant
            1. region a:364-478 [40164] picpiclink
          14. 3grt picpicxref
            complexed with fad, ts2; mutant
            1. region a:364-478 [40163] picpiclink
          15. 1grt picpicxref
            complexed with fad; mutant
            1. region a:364-478 [40165] picpiclink
          16. 2grt picpicxref
            complexed with fad, gds; mutant
            1. region a:364-478 [40166] picpiclink
          17. 4grt picpicxref
            complexed with fad, ts3; mutant
            1. region a:364-478 [40167] picpiclink
        2. Plasmodium falciparum [TaxId: 5833] [89990] (1)
          1. 1onf picpicxref
            complexed with fad
            1. region a:377-495 [87143] picpiclink
        3. Escherichia coli [TaxId: 562] [55428] (4)
          1. 1ges picpicxref
            complexed with fad; mutant
            1. region a:336-450 [40168] picpiclink
            2. region b:336-450 [40169] picpiclink
          2. 1ger picpicxref
            complexed with fad
            1. region a:336-450 [40170] picpiclink
            2. region b:336-450 [40171] picpiclink
          3. 1get picpicxref
            complexed with fad, nap
            1. region a:336-450 [40172] picpiclink
            2. region b:336-450 [40173] picpiclink
          4. 1geu picpicxref
            complexed with fad, nad; mutant
            1. region a:336-450 [40174] picpiclink
            2. region b:336-450 [40175] picpiclink
      2. Trypanothione reductase [55429]
        1. Crithidia fasciculata [TaxId: 5656] [55430] (6)
          1. 1fec picpicxref
            complexed with fad
            1. region a:358-485 [40176] picpiclink
            2. region b:358-486 [40177] picpiclink
          2. 1feb picpicxref
            complexed with fad
            1. region a:358-487 [40178] picpiclink
            2. region b:358-484 [40179] picpiclink
          3. 1fea picpicxref
            complexed with fad
            1. region a:358-487 [40180] picpiclink
            2. region b:358-484 [40181] picpiclink
            3. region c:358-487 [40182] picpiclink
            4. region d:358-484 [40183] picpiclink
          4. 2tpr picpicxref
            complexed with fad
            1. region a:358-482 [40184] picpiclink
            2. region b:358-482 [40185] picpiclink
          5. 1typ picpicxref
            complexed with fad, gsh, nap, spd
            1. region a:359-487 [40186] picpiclink
            2. region b:359-487 [40187] picpiclink
          6. 1tyt picpicxref
            complexed with fad
            1. region a:359-487 [40188] picpiclink
            2. region b:359-487 [40189] picpiclink
        2. Trypanosoma cruzi [TaxId: 5693] [55431] (6)
          1. 1aog picpicxref
            complexed with fad, mae
            1. region a:358-487 [40190] picpiclink
            2. region b:358-487 [40191] picpiclink
          2. 1bzl picpicxref
            1. region a:358-487 [40192] picpiclink
            2. region b:358-487 [40193] picpiclink
          3. 1gxf picpicxref
            complexed with fad, mae, qum
            1. region a:358-488 [90529] picpiclink
            2. region b:358-488 [90532] picpiclink
          4. 1nda picpicxrefxrefxrefxrefxref
            complexed with fad
            1. region a:358-484 [40194] picpiclink
            2. region b:358-484 [40195] picpiclink
          5. 1nda picpicxrefxrefxrefxrefxref
            duplicate of 1NDA A:358-484
            complexed with fad
            1. region c:358-484 [118566] picpiclink
          6. 1nda picpicxrefxrefxrefxrefxref
            duplicate of 1NDA A:358-484
            complexed with fad
            1. region d:358-484 [118569] picpiclink
      3. Mammalian thioredoxin reductase [64329]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [64330] (1)
          1. 1h6v picpicxref
            complexed with fad, ndp; mutant
            1. region a:367-499 [60695] picpiclink
            2. region b:367-495 [60698] picpiclink
            3. region c:367-495 [60701] picpiclink
            4. region d:367-495 [60704] picpiclink
            5. region e:367-499 [60707] picpiclink
            6. region f:367-499 [60710] picpiclink
      4. Apoptosis-inducing factor (AIF) [75489]
        contains a large loop insertion in this domain
        1. Human (Homo sapiens) [TaxId: 9606] [75490] (1)
          1. 1m6i picpicxref
            complexed with fad
            1. region a:478-608 [74535] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [75491] (1)
          1. 1gv4 picpicxref
            complexed with fad
            1. region a:478-610 [70591] picpiclink
            2. region b:478-610 [70594] picpiclink
      5. NADH peroxidase [55432]
        1. Enterococcus faecalis [TaxId: 1351] [55433] (8)
          1. 1nhp picpicxref
            complexed with fad, so4; mutant
            1. region a:322-447 [40196] picpiclink
          2. 1nhs picpicxref
            complexed with cyo, fad, so4; mutant
            1. region a:322-447 [40199] picpiclink
          3. 1nhq picpicxref
            complexed with fad, so4; mutant
            1. region a:322-447 [40197] picpiclink
          4. 1nhr picpicxref
            complexed with fad, so4; mutant
            1. region a:322-447 [40198] picpiclink
          5. 1npx picpicxref
            complexed with cyo, fad
            1. region a:322-447 [40200] picpiclink
          6. 2npx picpicxref
            complexed with cyo, fad, nad
            1. region a:322-447 [40201] picpiclink
          7. 1f8w picpicxref
            complexed with fad; mutant
            1. region a:322-447 [40202] picpiclink
          8. 1joa picpicxref
            complexed with fad
            1. region a:322-447 [40203] picpiclink
      6. NADH-dependent ferredoxin reductase, BphA4 [55434]
        1. Pseudomonas sp., KKS102 [TaxId: 306] [55435] (2)
          1. 1d7y picpicxref
            complexed with fad
            1. region a:309-405 [40204] picpiclink
          2. 1f3p picpicxref
            complexed with fad, nad
            1. region a:309-405 [59634] picpiclink
      7. Putidaredoxin reductase [103115]
        1. Pseudomonas putida [TaxId: 303] [103116] (2)
          1. 1q1r picpicxref
            complexed with fad
            1. region a:320-422 [95602] picpiclink
            2. region b:320-422 [95605] picpiclink
          2. 1q1w picpicxref
            complexed with fad
            1. region a:320-423 [95611] picpiclink
            2. region b:320-423 [95614] picpiclink
      8. Dihydrolipoamide dehydrogenase [55436]
        1. Pseudomonas putida [TaxId: 303] [55437] (1)
          1. 1lvl picpicxref
            complexed with fad, nad
            1. region a:336-458 [40205] picpiclink
        2. Pseudomonas fluorescens [TaxId: 294] [55438] (1)
          1. 1lpf picpicxref
            complexed with fad
            1. region a:349-472 [40206] picpiclink
            2. region b:349-472 [40207] picpiclink
        3. Azotobacter vinelandii [TaxId: 354] [55439] (1)
          1. 3lad picpicxref
            complexed with fad
            1. region a:349-472 [40208] picpiclink
            2. region b:349-472 [40209] picpiclink
        4. Bacillus stearothermophilus [TaxId: 1422] [55440] (1)
          1. 1ebd picpicxrefxref
            complexed with fad
            1. region a:347-461 [40210] picpiclink
            2. region b:347-461 [40211] picpiclink
        5. Neisseria meningitidis [TaxId: 487] [55441] (2)
          1. 1ojt picpicxref
            complexed with fad
            1. region a:471-598 [40212] picpiclink
          2. 1bhy picpicxref
            complexed with fad
            1. region a:471-598 [40213] picpiclink
        6. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64331] (3)
          1. 1v59 picpicxrefxrefxrefxref
            automatically matched to d1jeha3
            complexed with fad, nad, po4
            1. region a:356-478 [119840] picpiclink
          2. 1v59 picpicxrefxrefxrefxref
            automatically matched to d1jeha3
            complexed with fad, nad, po4
            1. region b:356-478 [119843] picpiclink
          3. 1jeh picpicxref
            complexed with fad
            1. region a:356-478 [62914] picpiclink
            2. region b:356-478 [62917] picpiclink
        7. Garden pea (Pisum sativum) [TaxId: 3888] [55442] (1)
          1. 1dxl picpicxref
            complexed with fad
            1. region a:348-470 [40214] picpiclink
            2. region b:348-470 [40215] picpiclink
            3. region c:348-470 [40216] picpiclink
            4. region d:348-470 [40217] picpiclink
        8. Mycobacterium tuberculosis [TaxId: 1773] [118041] (1)
          SQ O53355
          1. 1xdi picpicxref
            complexed with fad
            1. region a:349-466 [115161] picpiclink
            2. region b:349-466 [115163] picpiclink
      9. NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase [82726]
        1. Xanthobacter sp., py2 [TaxId: 35809] [82727] (6)
          1. 1mo9 picpicxref
            complexed with fad, kpc
            1. region a:384-523 [79343] picpiclink
            2. region b:384-523 [79346] picpiclink
          2. 2c3c picpicxrefxrefxrefxref
            automatically matched to d1mo9a3
            complexed with acn, com, fad, nap
            1. region a:384-523 [129727] picpiclink
          3. 2c3c picpicxrefxrefxrefxref
            automatically matched to d1mo9a3
            complexed with acn, com, fad, nap
            1. region b:384-523 [129730] picpiclink
          4. 2c3d picpicxrefxrefxrefxref
            automatically matched to d1mo9a3
            complexed with com, fad
            1. region a:384-523 [129733] picpiclink
          5. 2c3d picpicxrefxrefxrefxref
            automatically matched to d1mo9a3
            complexed with com, fad
            1. region b:384-523 [129736] picpiclink
          6. 1mok picpicxref
            complexed with fad
            1. region a:384-523 [79349] picpiclink
            2. region b:384-523 [79352] picpiclink
            3. region c:384-523 [79355] picpiclink
            4. region d:384-523 [79358] picpiclink
      10. Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit [55443]
        rudiment "interface" domain of smaller size; beta(3)-alpha
        1. Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049] [55444] (1)
          1. 1fcd picpicxrefxref
            complexed with fad, hem
            1. region a:328-401 [40218] picpiclink
            2. region b:328-401 [40219] picpiclink
      11. NADH oxidase /nitrite reductase [118042]
        1. Pyrococcus furiosus [TaxId: 2261] [118043] (1)
          SQ Q8U1K9
          1. 1xhc picpicxref
            Structural genomics target
            complexed with fad
            1. region a:290-351 [115294] picpiclink
  2. CO dehydrogenase flavoprotein C-terminal domain-like [55447] (1)
    link to SUPERFAMILY database - Superfamily
    1. CO dehydrogenase flavoprotein C-terminal domain-like [55448] (6)
      1. Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain [55449]
        1. Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137] [55450] (7)
          1. 1n62 picpicxrefxrefxrefxrefxref
            complexed with cub, fad, fes, mcn, po4
            1. region c:178-286 [80094] picpiclink
            2. region f:178-286 [80100] picpiclink
          2. 1n60 picpicxrefxrefxrefxrefxref
            complexed with fad, fes, mcn, omo, po4
            1. region c:178-286 [80070] picpiclink
            2. region f:178-286 [80076] picpiclink
          3. 1n63 picpicxrefxrefxrefxrefxref
            complexed with cun, fad, fes, mcn, po4
            1. region c:178-287 [80106] picpiclink
            2. region f:178-286 [80112] picpiclink
          4. 1n61 picpicxrefxrefxrefxrefxref
            complexed with cun, fad, fes, mcn, po4
            1. region c:178-287 [80082] picpiclink
            2. region f:178-286 [80088] picpiclink
          5. 1n5w picpicxrefxrefxrefxrefxref
            complexed with cum, fad, fes, mcn, po4
            1. region c:178-287 [80049] picpiclink
            2. region f:178-286 [80055] picpiclink
          6. 1zxi picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1n5wc1
            complexed with cu, cum, fad, fes, mcn, po4
            1. region c:178-287 [125776] picpiclink
          7. 1zxi picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1n5wc1
            complexed with cu, cum, fad, fes, mcn, po4
            1. region f:178-286 [125780] picpiclink
        2. Hydrogenophaga pseudoflava [TaxId: 47421] [55451] (2)
          1. 1ffv picpicxrefxrefxrefxrefxref
            complexed with aro, csz, fad, fes, pcd
            1. region c:178-287 [40223] picpiclink
            2. region f:178-287 [40224] picpiclink
          2. 1ffu picpicxrefxrefxrefxrefxref
            complexed with aro, cdp, csz, fad, fes
            1. region c:178-287 [40225] picpiclink
            2. region f:178-287 [40226] picpiclink
      2. Xanthine oxidase, domain 4 (?) [55452]
        1. Cow (Bos taurus) [TaxId: 9913] [55453] (7)
          SQ P80457
          1. 1v97 picpicxrefxrefxrefxrefxref
            complexed with acy, ca, fad, fes, fyx, gol, mos, mte
            1. region a:415-528 [108439] picpiclink
            2. region b:415-528 [108445] picpiclink
          2. 1vdv picpicxrefxrefxrefxrefxref
            complexed with acy, ca, fad, fes, gol, mos, mte, ysh
            1. region a:415-528 [113617] picpiclink
            2. region b:415-528 [113623] picpiclink
          3. 1fo4 picpicxrefxrefxrefxrefxref
            complexed with ca, fad, fes, gol, mos, mte, sal
            1. region a:415-531 [40227] picpiclink
            2. region b:415-528 [40228] picpiclink
          4. 3b9j picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1fo4a4
            complexed with 290, ca, fad, fes, mos, mte
            1. region b:415-528 [155002] picpiclink
          5. 3b9j picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1fo4a4
            complexed with 290, ca, fad, fes, mos, mte
            1. region j:415-528 [155008] picpiclink
          6. 1fiq picpicxrefxrefxrefxrefxref
            complexed with fad, fes, gol, mos, mte, sal
            1. region b:415-528 [40229] picpiclink
          7. 1n5x picpicxrefxrefxrefxrefxref
            complexed with fad, fes, mos, mte, tei
            1. region a:415-531 [85345] picpiclink
            2. region b:415-531 [85351] picpiclink
      3. Xanthine dehydrogenase chain A, domain 4 [69772]
        1. Rhodobacter capsulatus [TaxId: 1061] [69773] (2)
          1. 1jro picpicxrefxrefxrefxrefxref
            complexed with ca, fad, fes, mos, mpn
            1. region a:346-462 [67139] picpiclink
            2. region c:346-462 [67145] picpiclink
            3. region e:346-462 [67151] picpiclink
            4. region g:346-462 [67157] picpiclink
          2. 1jrp picpicxrefxrefxrefxrefxref
            complexed with 141, ca, fad, fes, mos, mpn
            1. region a:346-462 [67163] picpiclink
            2. region c:346-462 [67169] picpiclink
            3. region e:346-462 [67175] picpiclink
            4. region g:346-462 [67181] picpiclink
      4. Quinoline 2-oxidoreductase medium subunit QorM [111061]
        1. Pseudomonas putida [TaxId: 303] [111062] (1)
          SQ P72222
          1. 1t3q picpicxrefxrefxrefxrefxref
            complexed with fad, fes, gol, mcn, smo, so4
            1. region c:177-285 [106371] picpiclink
            2. region f:177-285 [106377] picpiclink
      5. 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain [118044]
        1. Thauera aromatica [TaxId: 59405] [118045] (2)
          SQ O33820
          1. 1rm6 picpicxrefxrefxrefxrefxref
            complexed with cl, epe, fad, fes, fs4, k, na, pcd, so4
            1. region b:217-323 [111874] picpiclink
            2. region e:217-323 [111880] picpiclink
          2. 1sb3 picpicxrefxrefxrefxrefxref
            complexed with epe, fad, fes, fs4, pcd, so4
            1. region b:217-323 [112054] picpiclink
            2. region e:217-323 [112060] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk