Fold: Origin of replication-binding domain, RBD-like

alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Origin of replication-binding domain, RBD-like [55463]
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

Superfamilies:

1. Origin of replication-binding domain, RBD-like [55464] (5)
   uperfamily
   1. The origin DNA-binding domain of SV40 T-antigen [55465] (1)
      1. The origin DNA-binding domain of SV40 T-antigen [55466]
         1. Simian virus 40, Sv40 [TaxId: 10633] [55467] (14)
            1. 2fuf
               automatically matched to d1tbd__
               complexed with flc
               1. region a:131-256 [134120]
            2. 2ipr
               automatically matched to d1tbd__
               1. region a:132-256 [137583]
            3. 2ipr
               automatically matched to d1tbd__
               1. region b:134-256 [137584]
            4. 2itl
               automatically matched to d1tbd__
               1. region a:134-253 [137644]
            5. 2itl
               automatically matched to d1tbd__
               1. region b:135-249 [137645]
            6. 2ntc
               automatically matched to d1tbd__
               1. region a:132-256 [138577]
            7. 2ntc
               automatically matched to d1tbd__
               1. region b:133-256 [138578]
            8. 2itj
               automatically matched to d1tbd__
               1. region a:132-256 [137640]
            9. 2itj
               automatically matched to d1tbd__
               1. region b:132-252 [137641]
            10. 2if9
                automatically matched to d1tbd__
                1. region a:131-256 [137327]
            11. 2if9
                automatically matched to d1tbd__
                1. region b:131-256 [137328]
            12. 1z1d
                automatically matched to d1tbd__
                1. region b:1-131 [124352]
            13. 2tbd
                1. chain a [40241]
            14. 1tbd
                1. chain a [40240]
   2. DNA-binding domain of REP protein [82728] (1)
      1. DNA-binding domain of REP protein [82729]
         1. Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735] [82730] (2)
            1. 1l5i
               1. chain a [77706]
            2. 1l2m
               1. chain a [77657]
   3. Replication initiation protein E1 [64332] (2)
      1. Replication initiation protein E1 [64333]
         1. Bovine papillomavirus [TaxId: 10571] [64334] (3)
            1. 1f08
               complexed with br
               1. chain a [59564]
               2. chain b [59565]
            2. 1ksy
               1. chain a [72948]
               2. chain b [72949]
               3. chain c [72950]
            3. 1ksx
               1. chain a [72940]
               2. chain b [72941]
               3. chain e [72942]
               4. chain f [72943]
               5. chain i [72944]
               6. chain j [72945]
               7. chain m [72946]
               8. chain n [72947]
         2. Human papillomavirus type 18 [TaxId: 333761] [103119] (1)
            1. 1r9w
               1. chain a [97264]
   4. Replication protein Rep, nuclease domain [75492] (1)
      1. Replication protein Rep, nuclease domain [75493]
         1. Adeno-associated virus, aav-5 [TaxId: 272636] [75494] (3)
            1. 1m55
               complexed with cl, zn
               1. chain a [74469]
               2. chain b [74470]
            2. 1uut
               complexed with cl, mg
               1. chain a [100022]
               2. chain b [100023]
            3. 1rz9
               1. chain a [98145]
               2. chain b [98146]
               3. chain c [98147]
               4. chain d [98148]
               5. chain e [98149]
   5. Relaxase domain [103120] (2)
      circular permutation of the common fold
      1. F factor TraI relaxase [103121]
         1. Escherichia coli [TaxId: 562] [103122] (1)
            1. 1p4d
               complexed with egl, mg
               1. chain a [94101]
               2. chain b [94102]
               3. chain c [94103]
      2. TrwC relaxase [103123]
         1. Escherichia coli [TaxId: 562] [103124] (5)
            1. 1omh
               complexed with so4
               1. chain a [93348]
            2. 1s6m
               automatically matched to d1omha_
               complexed with ni
               1. region a:1-293 [118875]
            3. 1zm5
               automatically matched to d1omha_
               complexed with cu, so4
               1. region a:1-293 [125334]
            4. 1qx0
               complexed with so4, zn
               1. chain a [96511]
            5. 1osb
               complexed with so4
               1. chain a [93488]
               2. chain c [93489]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk