Structural Classification of Proteins
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Superfamily: Origin of replication-binding domain, RBD-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Origin of replication-binding domain, RBD-like [55463]
    alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325
  4. Superfamily: Origin of replication-binding domain, RBD-like [55464]
    link to SUPERFAMILY database - Superfamily

Families:

  1. The origin DNA-binding domain of SV40 T-antigen [55465] (1)
    1. The origin DNA-binding domain of SV40 T-antigen [55466]
      1. Simian virus 40, Sv40 [TaxId: 10633] [55467] (14)
        1. 2fuf picpic
          automatically matched to d1tbd__
          complexed with flc
          1. region a:131-256 [134120] picpiclink
        2. 2ipr picpic
          automatically matched to d1tbd__
          1. region a:132-256 [137583] picpiclink
        3. 2ipr picpic
          automatically matched to d1tbd__
          1. region b:134-256 [137584] picpiclink
        4. 2itl picpic
          automatically matched to d1tbd__
          1. region a:134-253 [137644] picpiclink
        5. 2itl picpic
          automatically matched to d1tbd__
          1. region b:135-249 [137645] picpiclink
        6. 2ntc picpic
          automatically matched to d1tbd__
          1. region a:132-256 [138577] picpiclink
        7. 2ntc picpic
          automatically matched to d1tbd__
          1. region b:133-256 [138578] picpiclink
        8. 2itj picpic
          automatically matched to d1tbd__
          1. region a:132-256 [137640] picpiclink
        9. 2itj picpic
          automatically matched to d1tbd__
          1. region b:132-252 [137641] picpiclink
        10. 2if9 picpic
          automatically matched to d1tbd__
          1. region a:131-256 [137327] picpiclink
        11. 2if9 picpic
          automatically matched to d1tbd__
          1. region b:131-256 [137328] picpiclink
        12. 1z1d picpicxref
          automatically matched to d1tbd__
          1. region b:1-131 [124352] picpiclink
        13. 2tbd picpic
          1. chain a [40241] picpiclink
        14. 1tbd picpic
          1. chain a [40240] picpiclink
  2. DNA-binding domain of REP protein [82728] (1)
    1. DNA-binding domain of REP protein [82729]
      1. Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735] [82730] (2)
        1. 1l5i picpic
          1. chain a [77706] picpiclink
        2. 1l2m picpic
          1. chain a [77657] picpiclink
  3. Replication initiation protein E1 [64332] (2)
    1. Replication initiation protein E1 [64333]
      1. Bovine papillomavirus [TaxId: 10571] [64334] (3)
        1. 1f08 picpic
          complexed with br
          1. chain a [59564] picpiclink
          2. chain b [59565] picpiclink
        2. 1ksy picpic
          1. chain a [72948] picpiclink
          2. chain b [72949] picpiclink
          3. chain c [72950] picpiclink
        3. 1ksx picpic
          1. chain a [72940] picpiclink
          2. chain b [72941] picpiclink
          3. chain e [72942] picpiclink
          4. chain f [72943] picpiclink
          5. chain i [72944] picpiclink
          6. chain j [72945] picpiclink
          7. chain m [72946] picpiclink
          8. chain n [72947] picpiclink
      2. Human papillomavirus type 18 [TaxId: 333761] [103119] (1)
        1. 1r9w picpic
          1. chain a [97264] picpiclink
  4. Replication protein Rep, nuclease domain [75492] (1)
    1. Replication protein Rep, nuclease domain [75493]
      1. Adeno-associated virus, aav-5 [TaxId: 272636] [75494] (3)
        1. 1m55 picpic
          complexed with cl, zn
          1. chain a [74469] picpiclink
          2. chain b [74470] picpiclink
        2. 1uut picpic
          complexed with cl, mg
          1. chain a [100022] picpiclink
          2. chain b [100023] picpiclink
        3. 1rz9 picpic
          1. chain a [98145] picpiclink
          2. chain b [98146] picpiclink
          3. chain c [98147] picpiclink
          4. chain d [98148] picpiclink
          5. chain e [98149] picpiclink
  5. Relaxase domain [103120] (2)
    circular permutation of the common fold
    1. F factor TraI relaxase [103121]
      1. Escherichia coli [TaxId: 562] [103122] (1)
        1. 1p4d picpic
          complexed with egl, mg
          1. chain a [94101] picpiclink
          2. chain b [94102] picpiclink
          3. chain c [94103] picpiclink
    2. TrwC relaxase [103123]
      1. Escherichia coli [TaxId: 562] [103124] (5)
        1. 1omh picpic
          complexed with so4
          1. chain a [93348] picpiclink
        2. 1s6m picpic
          automatically matched to d1omha_
          complexed with ni
          1. region a:1-293 [118875] picpiclink
        3. 1zm5 picpic
          automatically matched to d1omha_
          complexed with cu, so4
          1. region a:1-293 [125334] picpiclink
        4. 1qx0 picpic
          complexed with so4, zn
          1. chain a [96511] picpiclink
        5. 1osb picpic
          complexed with so4
          1. chain a [93488] picpiclink
          2. chain c [93489] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk