Structural Classification of Proteins
Superfamily: Class II aaRS and biotin synthetases
uperfamily
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a+b)
[53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:
Class II aaRS and biotin synthetases
[55680]
contains large mixed beta-sheet
Superfamily:
Class II aaRS and biotin synthetases
[55681]
uperfamily
Families:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
[55682] (28)
Seryl-tRNA synthetase (SerRS) [55683]
Thermus thermophilus, strain hb27
[TaxId: 274]
[55684] (4)
1set
complexed with ssa
region a:111-421
[40708]
region b:111-421
[40709]
1sry
region a:111-421
[40706]
region b:111-421
[40707]
1ses
complexed with ahx, amp
region a:111-421
[40710]
region b:111-421
[40711]
1ser
complexed with dhu
region a:111-421
[40712]
region b:611-921
[40713]
Lysyl-tRNA synthetase (LysRS) [55685]
contains an insertion of LEM/SAP-like HeH motif, residues 337-379
Escherichia coli, gene lysU
[TaxId: 562]
[55686] (5)
1e1o
complexed with gol, lys
region a:161-502
[40714]
1e22
complexed with acp, gol, lys, mg
region a:161-502
[40715]
1e24
complexed with atp, gol, lys, mn
region a:161-502
[40716]
1e1t
complexed with gol, lad, mg, pop
region a:161-502
[40720]
1lyl
region a:161-502
[40717]
region b:154-502
[40718]
region c:161-502
[40719]
Escherichia coli, gene lysS
[TaxId: 562]
[55687] (2)
1bbu
complexed with lys
region a:161-502
[40721]
1bbw
region a:161-502
[40722]
Histidyl-tRNA synthetase (HisRS) [55688]
Escherichia coli
[TaxId: 562]
[55689] (7)
1kmm
complexed with ham
region a:4-325
[40723]
region b:2-325
[40724]
region c:4-325
[40725]
region d:4-325
[40726]
2el9
automatically matched to d1kmmb2
complexed with hss
region a:3-325
[146888]
2el9
automatically matched to d1kmmb2
complexed with hss
region b:4-325
[146890]
2el9
automatically matched to d1kmmb2
complexed with hss
region c:3-325
[146892]
2el9
automatically matched to d1kmmb2
complexed with hss
region d:4-325
[146894]
1htt
complexed with amp
region a:4-325
[40727]
region b:4-325
[40728]
region c:4-325
[40729]
region d:4-325
[40730]
1kmn
complexed with atp, hso
region a:4-325
[40731]
region b:3-325
[40732]
region c:4-325
[40733]
region d:2-325
[40734]
Staphylococcus aureus
[TaxId: 1280]
[55690] (1)
1qe0
region a:1-325
[40735]
region b:1-325
[40736]
Thermus thermophilus
[TaxId: 274]
[55691] (3)
1h4v
complexed with so4
region b:2-325
[60625]
1adj
complexed with so4
region a:2-325
[40737]
region b:2-325
[40738]
region c:2-325
[40739]
region d:2-325
[40740]
1ady
complexed with ham, so4
region a:2-325
[40741]
region b:2-325
[40742]
region c:2-325
[40743]
region d:2-325
[40744]
Archaeon Thermoplasma acidophilum
[TaxId: 2303]
[143637] (2)
SQ
Q9HLX5
3-329
1wu7
region a:3-329
[121276]
1wu7
automatically matched to 1WU7 A:3-329
region b:5-329
[121278]
Glycyl-tRNA synthetase (GlyRS) [55692]
Thermus thermophilus
[TaxId: 274]
[55693] (3)
1ati
region a:1-394
[40745]
region b:1-394
[40746]
1b76
complexed with atp
region a:1-394
[40747]
region b:1-394
[40748]
1ggm
complexed with gap
region a:1-394
[40749]
region b:1-394
[40750]
Threonyl-tRNA synthetase (ThrRS) [55694]
Escherichia coli
[TaxId: 562]
[55695] (5)
1qf6
complexed with aet, amp, dhu, g7m, psu, zn
region a:242-532
[40759]
1evl
complexed with tsb, zn
region a:242-532
[40751]
region b:242-532
[40752]
region c:242-532
[40753]
region d:242-532
[40754]
1fyf
complexed with ssa, zn
region a:242-532
[40755]
region b:242-532
[40756]
1evk
complexed with thr, zn
region a:242-532
[40757]
region b:242-532
[40758]
1kog
complexed with tsb, zn; mutant
region a:242-532
[72806]
region b:242-532
[72808]
region c:242-532
[72810]
region d:242-532
[72812]
region e:242-532
[72814]
region f:242-532
[72816]
region g:242-532
[72818]
region h:242-532
[72820]
Staphylococcus aureus
[TaxId: 1280]
[103154] (2)
1nyr
complexed with atp, thr, zn
region a:242-532
[92357]
region b:242-532
[92361]
1nyq
complexed with tsb, zn
region a:242-532
[92349]
region b:242-532
[92353]
Aspartyl-tRNA synthetase (AspRS) [55696]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[55697] (3)
1eov
region a:205-557
[40760]
1asz
protein/tRNA complex; complexed with atp
region a:205-557
[40761]
region b:205-557
[40762]
1asy
protein/tRNA complex
region a:205-557
[40763]
region b:205-557
[40764]
Archaeon Pyrococcus kodakaraensis
[TaxId: 311400]
[55698] (1)
1b8a
complexed with atp, mn
region a:104-438
[40765]
region b:1104-1438
[40766]
Thermus thermophilus, AspRS-2
[TaxId: 274]
[90008] (1)
non-discriminating and archaeal-type enzyme
1n9w
region a:111-414
[85474]
region b:111-414
[85476]
Escherichia coli
[TaxId: 562]
[55699] (3)
1c0a
region a:107-287,a:421-585
[40767]
1il2
complexed with 1mg, 5mc, 5mu, amo, h2u, psu, so4
region a:107-287,a:421-585
[66195]
region b:1107-1287,b:1421-1585
[66198]
1eqr
complexed with mg
region a:107-287,a:421-590
[40768]
region b:107-287,b:421-590
[40769]
region c:107-287,c:421-590
[40770]
Thermus thermophilus, AspRS-1
[TaxId: 274]
[55700] (3)
1l0w
region a:105-294,a:415-580
[73428]
region b:1105-1294,b:1415-1580
[73431]
1g51
complexed with amo, amp, so4
region a:105-294,a:415-580
[40771]
region b:1105-1294,b:1415-1580
[40772]
1efw
protein/RNA complex; complexed with 2ma, 4su, 5mu, g7m, h2u, psu, quo
region a:105-294,a:415-580
[40773]
region b:105-294,b:415-580
[40774]
Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS [55701]
Thermus thermophilus
[TaxId: 274]
[55702] (9)
identical sequence to
Thermus aquaticus
, TaxId: 271
1jjc
complexed with fa5, mn, so4
chain a
[66758]
2aly
automatically matched to d1eiya2
complexed with mn, so4, ysa
region a:85-350
[126987]
1pys
complexed with mg
chain a
[40775]
2amc
automatically matched to d1eiya2
complexed with mg, so4, tyr
region a:85-350
[127002]
2akw
automatically matched to d1eiya2
complexed with 200, mn, so4
region a:85-350
[126937]
1b7y
chain a
[40776]
2iy5
automatically matched to d1eiya2
complexed with fya, mg
region a:85-350
[137793]
1b70
chain a
[40777]
1eiy
region a:85-350
[40778]
Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain [55703]
this domain is non-catalytic
Thermus thermophilus
[TaxId: 274]
[55704] (9)
identical sequence to
Thermus aquaticus
, TaxId: 271
1jjc
complexed with fa5, mn, so4
region b:475-681
[66763]
2aly
automatically matched to d1b70b5
complexed with mn, so4, ysa
region b:475-681
[126993]
1pys
complexed with mg
region b:475-681
[40779]
2amc
automatically matched to d1b70b5
complexed with mg, so4, tyr
region b:475-681
[127008]
2akw
automatically matched to d1b70b5
complexed with 200, mn, so4
region b:475-681
[126943]
1b7y
region b:475-681
[40780]
2iy5
automatically matched to d1b70b5
complexed with fya, mg
region b:475-681
[137799]
1b70
region b:475-681
[40781]
1eiy
region b:475-681
[40782]
Glycyl-tRNA synthetase (GlyRS) alpha chain [75504]
Thermotoga maritima
[TaxId: 2336]
[75505] (1)
TM0216
1j5w
structural genomics
complexed with mse
chain a
[71589]
chain b
[71590]
Alanyl-tRNA synthetase (AlaRS) [103155]
Aquifex aeolicus
[TaxId: 63363]
[103156] (7)
1yfs
automatically matched to d1riqa2
complexed with ala
region a:1-236
[123089]
1yfs
automatically matched to d1riqa2
complexed with ala
region b:1-236
[123091]
1riq
region a:1-236
[97517]
1yfr
automatically matched to d1riqa2
complexed with atp, mg
region a:1-236
[123085]
1yfr
automatically matched to d1riqa2
complexed with atp, mg
region b:1-236
[123087]
1yft
automatically matched to d1riqa2
complexed with gly
region a:1-236
[123093]
1ygb
automatically matched to d1riqa2
complexed with ser
region a:1-236
[123141]
Prolyl-tRNA synthetase (ProRS) [64347]
Thermus thermophilus
[TaxId: 274]
[64348] (4)
1hc7
complexed with zn
region a:5-276
[60939]
region b:5-276
[60942]
region c:5-276
[60945]
region d:5-276
[60948]
1h4t
complexed with pro, zn
region a:5-276
[60611]
region b:5-276
[60614]
region c:5-276
[60617]
region d:5-276
[60620]
1h4s
complexed with 5mu, psd, psu, so4, zn
region a:5-276
[60605]
region b:5-276
[60608]
1h4q
complexed with 5mu, atp, pri, psu, so4, zn
region a:5-276
[60599]
region b:5-276
[60602]
Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]
[90009] (4)
1nj1
complexed with 5ca, mg, zn
region a:19-283
[85757]
1nj5
complexed with mg, p5a, zn
region a:19-283
[85764]
1nj6
complexed with a5a, mg, zn
region a:19-283
[85767]
1nj2
complexed with mg, zn
region a:19-283
[85760]
Archaeon (Methanocaldococcus jannaschii)
[TaxId: 2190]
[90010] (1)
1nj8
region a:0-267
[85771]
region b:0-267
[85774]
region c:0-267
[85777]
region d:0-267
[85780]
The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain [64349]
Mouse (Mus musculus)
[TaxId: 10090]
[64350] (2)
1g5h
complexed with gol, na
region a:41-330
[60271]
region b:40-332
[60273]
region c:41-330
[60275]
region d:40-337
[60277]
1g5i
complexed with gol, na
region a:41-330
[60279]
region b:40-332
[60281]
region c:41-330
[60283]
region d:40-337
[60285]
Human (Homo sapiens)
[TaxId: 9606]
[143638] (4)
SQ
Q9UHN1
66-355
2g4c
region a:66-355
[134583]
2g4c
automatically matched to 2G4C A:66-355
region b:66-355
[134585]
2g4c
automatically matched to 2G4C A:66-355
region c:67-355
[134587]
2g4c
automatically matched to 2G4C A:66-355
region d:67-355
[134589]
Asparagine synthetase [55705]
Escherichia coli
[TaxId: 562]
[55706] (2)
12as
complexed with amp; mutant
chain a
[40783]
chain b
[40784]
11as
mutant
chain a
[40785]
chain b
[40786]
Hypothetical protein PF1951 [103157]
Archaeon Pyrococcus furiosus
[TaxId: 2261]
[103158] (1)
AspRS-related protein
1nnh
structural genomics
complexed with na
chain a
[92005]
ATP phosphoribosyltransferase regulatory subunit HisZ [118058]
shares histidine-binding site with the HisRS catalytic domain
Thermotoga maritima
[TaxId: 2336]
[118059] (1)
SQ
Q9X0D3
1usy
complexed with his, po4
chain a
[113422]
chain b
[113423]
chain c
[113424]
chain d
[113425]
Lactococcus lactis
[TaxId: 1358]
[143639] (8)
SQ
Q02147
6-323
1z7m
complexed with po4, wo4
region a:6-323
[124632]
1z7m
automatically matched to 1Z7M A:6-323
complexed with po4, wo4
region b:6-323
[124633]
1z7m
automatically matched to 1Z7M A:6-323
complexed with po4, wo4
region c:6-323
[124634]
1z7m
automatically matched to 1Z7M A:6-323
complexed with po4, wo4
region d:6-323
[124635]
1z7n
automatically matched to 1Z7M A:6-323
complexed with po4, prp
region a:6-323
[124640]
1z7n
automatically matched to 1Z7M A:6-323
complexed with po4, prp
region b:6-323
[124641]
1z7n
automatically matched to 1Z7M A:6-323
complexed with po4, prp
region c:6-323
[124642]
1z7n
automatically matched to 1Z7M A:6-323
complexed with po4, prp
region d:6-323
[124643]
Biotin holoenzyme synthetase
[55707] (2)
Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain [55708]
this structure contains an SH2-like fold
Escherichia coli
[TaxId: 562]
[55709] (5)
1bia
region a:64-270
[40787]
1hxd
complexed with biotin
complexed with btn
region a:64-270
[61362]
region b:64-270
[61365]
2ewn
automatically matched to d1bia_3
complexed with btx
region a:64-270
[132472]
2ewn
automatically matched to d1bia_3
complexed with btx
region b:64-270
[132475]
1bib
complexed with btn
region a:64-270
[40788]
Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain [143640]
Archaeon Pyrococcus horikoshii
[TaxId: 53953]
[143641] (28)
SQ
O57883
1-188
2zgw
complexed with adn, btn; mutant
region a:1-188
[154422]
2zgw
automatically matched to 2ZGW A:1-188
complexed with adn, btn; mutant
region b:1-188
[154424]
2dto
automatically matched to 1WNL A:1-188
complexed with atp, btn
region a:1-188
[131722]
2dto
automatically matched to 1WNL A:1-188
complexed with atp, btn
region b:1-188
[131724]
2e64
automatically matched to 2ZGW A:1-188
mutant
region a:1-188
[146698]
2e64
automatically matched to 2ZGW A:1-188
mutant
region b:1-188
[146700]
1wqw
automatically matched to 1WNL A:1-188
complexed with bt5
region a:1-188
[121180]
1wqw
automatically matched to 1WNL A:1-188
complexed with bt5
region b:1-188
[121182]
1wnl
complexed with adp, gol
region a:1-188
[121095]
1wnl
automatically matched to 1WNL A:1-188
complexed with adp, gol
region b:1-188
[121097]
1wpy
automatically matched to 1WNL A:1-188
complexed with btn
region a:1-188
[121158]
1wpy
automatically matched to 1WNL A:1-188
complexed with btn
region b:1-188
[121160]
2fyk
automatically matched to 1WNL A:1-188
complexed with adp, btn
region a:1-188
[134375]
2fyk
automatically matched to 1WNL A:1-188
complexed with adp, btn
region b:1-188
[134377]
1wq7
automatically matched to 1WNL A:1-188
region a:1-188
[121166]
1wq7
automatically matched to 1WNL A:1-188
region b:1-188
[121168]
2e41
automatically matched to 2ZGW A:1-188
complexed with btx; mutant
region a:1-188
[146680]
2e41
automatically matched to 2ZGW A:1-188
complexed with btx; mutant
region b:1-188
[146682]
2dkg
automatically matched to 1WNL A:1-188
complexed with bt5, mg, pop
region a:1-188
[131552]
2dkg
automatically matched to 1WNL A:1-188
complexed with bt5, mg, pop
region b:1-188
[131554]
1x01
automatically matched to 1WNL A:1-188
complexed with acy, atp, po4
region a:1-188
[121538]
1x01
automatically matched to 1WNL A:1-188
complexed with acy, atp, po4
region b:1-188
[121540]
2ejf
automatically matched to 2ZGW A:1-188
complexed with adn, btn, gol; mutant
region a:1-188
[146872]
2ejf
automatically matched to 2ZGW A:1-188
complexed with adn, btn, gol; mutant
region b:1-188
[146874]
2dth
automatically matched to 1WNL A:1-188
complexed with adp, btn
region a:1-188
[131714]
2dth
automatically matched to 1WNL A:1-188
complexed with adp, btn
region b:1-188
[131716]
2dti
automatically matched to 1WNL A:1-188
complexed with bt5, mn, pop
region a:1-188
[131718]
2dti
automatically matched to 1WNL A:1-188
complexed with bt5, mn, pop
region b:1-188
[131720]
LplA-like
[143642] (6)
part of
Pfam 03099
Lipoyltransferase LipB [143643]
Mycobacterium tuberculosis
[TaxId: 1773]
[143644] (1)
SQ
Q10404
1-216
1w66
complexed with dka
region a:1-216
[120652]
LplA-like protein SP1160, N-terminal domain [143645]
Streptococcus pneumoniae
[TaxId: 1313]
[143646] (1)
SQ
Q97QP1
1-241
1vqz
complexed with edo, unl
region a:1-241
[120427]
Lipoate-protein ligase A [160604]
Streptococcus agalactiae
[TaxId: 1311]
[160605] (1)
SQ
Q3D8N4
2-270
2p0l
region a:4-272
[149135]
Thermoplasma acidophilum
[TaxId: 2303]
[160606] (11)
SQ
Q9HKT1
1-257
2c8m
automatically matched to 2ARS A:1-257
complexed with lpa
region a:1-256
[146379]
2c8m
automatically matched to 2ARS A:1-257
complexed with lpa
region b:1-257
[146380]
2c8m
automatically matched to 2ARS A:1-257
complexed with lpa
region c:1-257
[146381]
2c8m
automatically matched to 2ARS A:1-257
complexed with lpa
region d:1-255
[146382]
2ars
complexed with mg
region a:1-257
[146062]
2c7i
automatically matched to 2ARS A:1-257
region a:1-257
[146375]
2c7i
automatically matched to 2ARS A:1-257
region b:1-256
[146376]
2c7i
automatically matched to 2ARS A:1-257
region c:1-256
[146377]
2c7i
automatically matched to 2ARS A:1-257
region d:1-257
[146378]
2art
automatically matched to 2ARS A:1-257
complexed with amp, lpa, mg
region a:1-257
[146063]
2aru
automatically matched to 2ARS A:1-257
complexed with atp, mg
region a:1-257
[146064]
Two-domain LplA, N-terminal domain [160607]
Escherichia coli
[TaxId: 562]
[160608] (6)
SQ
P32099
1-246
1x2g
region a:1-246
[145841]
1x2g
automatically matched to 1X2G A:1-246
region b:1-246
[145843]
1x2g
automatically matched to 1X2G A:1-246
region c:1-246
[145845]
1x2h
automatically matched to 1X2G A:1-246
complexed with lpa
region a:1-246
[145847]
1x2h
automatically matched to 1X2G A:1-246
complexed with lpa
region b:1-246
[145849]
1x2h
automatically matched to 1X2G A:1-246
complexed with lpa
region c:1-246
[145851]
Hypothetical protein BH3822 [160609]
Bacillus halodurans
[TaxId: 86665]
[160610] (1)
SQ
Q9K6A7
12-276
2p5i
region a:14-278
[149248]
PH0223-like
[160611] (1)
Pfam 04017
; DUF366
Uncharacterized protein PH0223 [160612]
Pyrococcus horikoshii
[TaxId: 53953]
[160613] (6)
SQ
O57962
3-190
2ddz
complexed with gai, gol
region a:3-190
[146486]
2ddz
automatically matched to 2DDZ A:3-190
complexed with gai, gol
region b:3-190
[146487]
2ddz
automatically matched to 2DDZ A:3-190
complexed with gai, gol
region c:3-190
[146488]
2ddz
automatically matched to 2DDZ A:3-190
complexed with gai, gol
region d:3-190
[146489]
2ddz
automatically matched to 2DDZ A:3-190
complexed with gai, gol
region e:3-190
[146490]
2ddz
automatically matched to 2DDZ A:3-190
complexed with gai, gol
region f:3-190
[146491]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk