Structural Classification of Proteins
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Family: YkuI C-terminal domain-like

PfamB 021678

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily: Sensory domain-like [103190]
    alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
    link to SUPERFAMILY database - Superfamily
  5. Family: YkuI C-terminal domain-like [143732]
    PfamB 021678

Protein Domains:

  1. Hypothetical protein YkuI, C-terminal domain [143733]
    1. Bacillus subtilis [TaxId: 1423] [143734] (2)
      SQ O35014 263-407
      1. 2bas picpicxrefxref
        complexed with bme
        1. region a:263-407 [128245] picpiclink
      2. 2bas picpicxrefxref
        automatically matched to 2BAS A:263-407
        complexed with bme
        1. region b:263-400 [128247] picpiclink
  2. GGDEF family protein VP0354 [160677]
    N-terminal region, consist of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region
    1. Vibrio parahaemolyticus [TaxId: 670] [160678] (4)
      SQ Q87SR8 207-299! SQ Q87SR8 35-206
      1. 2p7j picpic
        complexed with acy, na, so4
        1. region a:181-273 [149287] picpiclink
      2. 2p7j picpic
        complexed with acy, na, so4
        1. region a:9-180 [149288] picpiclink
      3. 2p7j picpic
        automatically matched to 2P7J A:181-273
        complexed with acy, na, so4
        1. region b:181-273 [149289] picpiclink
      4. 2p7j picpic
        automatically matched to 2P7J A:9-180
        complexed with acy, na, so4
        1. region b:9-180 [149290] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk