Structural Classification of Proteins
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Fold: YrdC/RibB

core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: YrdC/RibB [55820]
    core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other

Superfamilies:

  1. YrdC/RibB [55821] (2)
    link to SUPERFAMILY database - Superfamily
    1. YrdC-like [55822] (3)
      contains two additional strands in the C-terminal extension
      1. Hypothetical protein YrdC [55823]
        1. Escherichia coli [TaxId: 562] [55824] (1)
          1. 1hru picpic
            structural genomics
            complexed with po4
            1. chain a [40926] picpiclink
            2. chain b [40927] picpiclink
      2. Hypothetical protein YciO [75529]
        1. Escherichia coli [TaxId: 562] [75530] (2)
          1. 1k7j picpic
            structural genomics
            complexed with mse, so4
            1. chain a [72103] picpiclink
          2. 1kk9 picpic
            complexed with mse, so4
            1. chain a [77432] picpiclink
      3. Hypothetical protein MTH1692 [75531]
        1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [75532] (1)
          1. 1jcu picpic
            structural genomics
            1. chain a [71634] picpiclink
    2. 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64372] (4)
      contains one additional helix in the C-terminal extension
      1. 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64373]
        1. Escherichia coli [TaxId: 562] [64374] (3)
          1. 1g57 picpic
            complexed with cs
            1. chain a [60253] picpiclink
            2. chain b [60254] picpiclink
          2. 1g58 picpic
            complexed with au
            1. chain a [60255] picpiclink
            2. chain b [60256] picpiclink
          3. 1iez picpic
            1. chain a [66129] picpiclink
        2. Magnaporthe grisea [TaxId: 148305] [75533] (5)
          1. 1k4i picpic
            complexed with mg, sul
            1. chain a [72056] picpiclink
          2. 1k4p picpic
            complexed with sul, zn
            1. chain a [72061] picpiclink
          3. 1k4o picpic
            complexed with gol, mn, sul
            1. chain a [72060] picpiclink
          4. 1k49 picpic
            complexed with sul
            1. chain a [72053] picpiclink
          5. 1k4l picpic
            complexed with mn, sul
            1. chain a [72058] picpiclink
        3. Archaeon Methanocaldococcus jannaschii [TaxId: 2190] [103219] (3)
          SQ Q60364
          1. 1snn picpic
            complexed with ca, r5p, zn; mutant
            1. chain a [105821] picpiclink
            2. chain b [105822] picpiclink
          2. 1pvy picpic
            complexed with ca, r5p, zn; mutant
            1. chain a [95195] picpiclink
            2. chain b [95196] picpiclink
          3. 1pvw picpic
            complexed with ca, po4, zn
            1. chain a [95192] picpiclink
            2. chain b [95193] picpiclink
            3. chain c [95194] picpiclink
        4. Candida albicans [TaxId: 5476] [111135] (4)
          SQ Q5A3V6
          1. 1tks picpic
            1. chain a [107114] picpiclink
            2. chain b [107115] picpiclink
          2. 2ris picpic
            automatically matched to d1tksa_
            1. region a:3-204 [152097] picpiclink
          3. 1tku picpic
            complexed with 5rp
            1. chain a [107116] picpiclink
            2. chain b [107117] picpiclink
          4. 2riu picpic
            automatically matched to d1tksa_
            complexed with 5rp
            1. region a:3-203 [152099] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk