Structural Classification of Proteins
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Superfamily: YrdC/RibB

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: YrdC/RibB [55820]
    core: alpha-beta(2)-alpha-beta-alpha(2)-beta(2)-alpha-beta-alpha-beta; 3 layers; mixed twisted sheet of 7 strands; order 7126354; strands 7 and 1 are parallel to each other
  4. Superfamily: YrdC/RibB [55821]
    link to SUPERFAMILY database - Superfamily

Families:

  1. YrdC-like [55822] (3)
    contains two additional strands in the C-terminal extension
    1. Hypothetical protein YrdC [55823]
      1. Escherichia coli [TaxId: 562] [55824] (1) picpic
    2. Hypothetical protein YciO [75529]
      1. Escherichia coli [TaxId: 562] [75530] (2) picpic
    3. Hypothetical protein MTH1692 [75531]
      1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [75532] (1) picpic
  2. 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64372] (4)
    contains one additional helix in the C-terminal extension
    1. 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB [64373]
      1. Escherichia coli [TaxId: 562] [64374] (3) picpic
      2. Magnaporthe grisea [TaxId: 148305] [75533] (5) picpic
      3. Archaeon Methanocaldococcus jannaschii [TaxId: 2190] [103219] (3) picpic
        SQ Q60364
      4. Candida albicans [TaxId: 5476] [111135] (4) picpic
        SQ Q5A3V6
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk