Structural Classification of Proteins

Superfamily: Thymidylate synthase/dCMP hydroxymethylase

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Thymidylate synthase/dCMP hydroxymethylase [55830]
contains large mixed beta-sheet
Superfamily: Thymidylate synthase/dCMP hydroxymethylase [55831]
uperfamily

Families:

Thymidylate synthase/dCMP hydroxymethylase [55832] (10)
1. Thymidylate synthase [55833]
  1. Escherichia coli [TaxId: 562] [55834] (56)
    1. 2g8o
      automatically matched to d1tlca_
      complexed with cb3, ump
      1. region a:1-264 [134779]
    2. 2g8o
      automatically matched to d1tlca_
      complexed with cb3, ump
      1. region b:1-264 [134780]
    3. 1qqq
      complexed with so4; mutant
      1. chain a [40931]
    4. 2a9w
      automatically matched to d1tlca_
      complexed with 2br, bme, ga9, gol, po4, ump
      1. region a:1-264 [126456]
    5. 2a9w
      automatically matched to d1tlca_
      complexed with 2br, bme, ga9, gol, po4, ump
      1. region b:1-264 [126457]
    6. 2a9w
      automatically matched to d1tlca_
      complexed with 2br, bme, ga9, gol, po4, ump
      1. region c:1-264 [126458]
    7. 2a9w
      automatically matched to d1tlca_
      complexed with 2br, bme, ga9, gol, po4, ump
      1. region d:1-264 [126459]
    8. 1f4g
      complexed with gol, mho, sul, tp4
      1. chain a [40933]
      2. chain b [40934]
    9. 1evf
      complexed with so4; mutant
      1. chain a [40932]
    10. 1ev5
      complexed with so4; mutant
      1. chain a [40935]
    11. 1tys
      complexed with cbx, dhf, tmp; mutant
      1. chain a [40937]
    12. 1f4b
      complexed with gol, sul
      1. chain a [40936]
    13. 1kzi
      complexed with co3, cxm, dtt, gol, thg, ump
      1. chain a [73363]
      2. chain b [73364]
    14. 2ftq
      automatically matched to d1tlca_
      complexed with po4, so4
      1. region a:1-264 [134076]
    15. 1axw
      complexed with cbx, mtx, ump
      1. chain a [40938]
      2. chain b [40939]
    16. 1trg
      complexed with cb3, cbx, ump
      1. chain a [40940]
    17. 1f4e
      complexed with gol, sul, tpr
      1. chain a [40941]
    18. 1kce
      complexed with cb3, ump; mutant
      1. chain a [40944]
      2. chain b [40945]
    19. 1f4f
      complexed with sul, tp3
      1. chain a [40946]
      2. chain b [40947]
    20. 1f4c
      complexed with gol, sul, tp2
      1. chain a [40950]
      2. chain b [40951]
    21. 1jg0
      complexed with ddt, ump
      1. chain a [66659]
      2. chain b [66660]
    22. 1evg
      complexed with so4; mutant
      1. chain a [40954]
    23. 1dna
      complexed with cb3, ump; mutant
      1. chain a [40956]
      2. chain b [40957]
    24. 1bdu
      complexed with cbx, dur, po4
      1. chain a [40955]
    25. 1aob
      complexed with cbx, ddu, po4
      1. chain a [40969]
    26. 1bid
      complexed with cbx, ump
      1. chain a [40960]
    27. 1tsd
      complexed with bme, cbx, u18, ump
      1. chain a [40948]
      2. chain b [40949]
    28. 1syn
      complexed with cbx, f89, ump
      1. chain a [40958]
      2. chain b [40959]
    29. 1bq1
      complexed with cb3, ump; mutant
      1. chain a [40965]
      2. chain b [40966]
    30. 1tdu
      complexed with cb3, cbx, dur, po4
      1. chain a [40963]
      2. chain b [40964]
    31. 1fwm
      complexed with cb3, so4; mutant
      1. chain a [90500]
      2. chain b [90501]
    32. 1tsn
      complexed with c2f, po4, ufp
      1. chain a [40970]
    33. 1tlc
      complexed with cbx, dgp, f89
      1. chain a [40942]
      2. chain b [40943]
    34. 1aiq
      complexed with cb3, ump; mutant
      1. chain a [40967]
      2. chain b [40968]
    35. 1bjg
      complexed with tmf, ufp; mutant
      1. chain a [40977]
    36. 2tsc
      complexed with cb3, ump
      1. chain a [40952]
      2. chain b [40953]
    37. 1ddu
      complexed with cb3, cbx, ddu, po4
      1. chain a [40961]
      2. chain b [40962]
    38. 1bq2
      complexed with po4; mutant
      1. chain a [40971]
    39. 2bbq
      complexed with pfg, ump
      1. chain a [40974]
      2. chain b [40975]
    40. 1tjs
      complexed with cbx, po4
      1. chain a [40976]
    41. 1f4d
      complexed with gol, sul, tp2; mutant
      1. chain a [40972]
      2. chain b [40973]
    42. 1jtu
      complexed with lyb, ump
      1. chain a [63284]
      2. chain b [63285]
    43. 1zpr
      complexed with cb3, ump; mutant
      1. chain a [40978]
      2. chain b [40979]
    44. 1jtq
      complexed with ly3, ump
      1. chain a [63282]
      2. chain b [63283]
    45. 1nce
      complexed with cb3, cxm, ump; mutant
      1. chain a [80401]
      2. chain b [80402]
    46. 1an5
      complexed with cb3, cbx, po4
      1. chain a [40986]
      2. chain b [40987]
    47. 2kce
      complexed with d16, ump
      1. chain a [40984]
      2. chain b [40985]
    48. 3tms
      complexed with po4
      1. chain a [40980]
    49. 1tls
      complexed with c2f, ufp
      1. chain a [40982]
      2. chain b [40983]
    50. 1ev8
      mutant
      1. chain a [40989]
    51. 1ajm
      mutant
      1. chain a [40981]
    52. 1ffl
      mutant
      1. chain a [40988]
    53. 1kzj
      complexed with cb3, cxm, ump; mutant
      1. chain a [73365]
      2. chain b [73366]
      3. chain c [73367]
      4. chain d [73368]
      5. chain e [73369]
      6. chain f [73370]
    54. 1jut
      complexed with lyd, ump
      1. chain a [63301]
      2. chain b [63302]
    55. 1ju6
      complexed with lya, po4, ump; mutant
      1. chain a [63289]
      2. chain b [63290]
      3. chain c [63291]
      4. chain d [63292]
    56. 1juj
      complexed with lya, ump; mutant
      1. chain a [63297]
      2. chain b [63298]
      3. chain c [63299]
      4. chain d [63300]
  2. Lactobacillus casei [TaxId: 1582] [55835] (39)
    1. 1tsy
      complexed with ump; mutant
      1. chain a [40990]
    2. 1tsw
      complexed with po4; mutant
      1. chain a [40991]
    3. 1bp0
      complexed with dum, pot; mutant
      1. chain a [40993]
    4. 1jmg
      complexed with ump; mutant
      1. chain a [41008]
    5. 1tsl
      complexed with a15, po4
      1. chain a [40992]
    6. 1bo8
      complexed with dum, pot; mutant
      1. chain a [40994]
    7. 1njd
      complexed with ump; mutant
      1. chain a [41004]
    8. 4tms
      complexed with po4
      1. chain a [40995]
    9. 1bp6
      complexed with dum, pot; mutant
      1. chain a [41000]
    10. 1bo7
      complexed with dum; mutant
      1. chain a [40997]
    11. 1bpj
      complexed with dum, pot; mutant
      1. chain a [40996]
    12. 1njc
      complexed with dcm; mutant
      1. chain a [41005]
    13. 1nje
      complexed with dcm
      1. chain a [41001]
    14. 1jmi
      complexed with ump; mutant
      1. chain a [41006]
    15. 1tsx
      complexed with ump; mutant
      1. chain a [41002]
    16. 1nja
      complexed with dcm; mutant
      1. chain a [40999]
    17. 1tvv
      complexed with cb3, ump; mutant
      1. chain a [40998]
    18. 1jmf
      complexed with ump; mutant
      1. chain a [41007]
    19. 2tdm
      complexed with ump
      1. chain a [41011]
    20. 1jmh
      complexed with ump; mutant
      1. chain a [41009]
    21. 1thy
      complexed with ump
      1. chain a [41010]
    22. 1tvu
      complexed with cb3, ump; mutant
      1. chain a [41012]
    23. 1vze
      complexed with cb3, ump; mutant
      1. chain a [41003]
    24. 1tsv
      complexed with ump; mutant
      1. chain a [41019]
    25. 1tvw
      complexed with cb3, ump; mutant
      1. chain a [41013]
    26. 1tsz
      complexed with po4; mutant
      1. chain a [41020]
    27. 1tsm
      complexed with mr2, po4
      1. chain a [41024]
    28. 1vzb
      complexed with ump; mutant
      1. chain a [41022]
    29. 1njb
      complexed with ump; mutant
      1. chain a [41023]
    30. 1vza
      complexed with ump; mutant
      1. chain a [41017]
    31. 2tdd
      complexed with thf, ufp; mutant
      1. chain a [41021]
    32. 1lca
      complexed with cb3, ump
      1. chain a [41015]
    33. 1vzd
      complexed with cb3, ufp; mutant
      1. chain a [41014]
    34. 1vzc
      complexed with ufp; mutant
      1. chain a [41016]
    35. 1tda
      complexed with po4; mutant
      1. chain a [41027]
    36. 1lce
      complexed with tmf, ump
      1. chain a [41018]
    37. 1tdc
      complexed with ump; mutant
      1. chain a [41026]
    38. 1tdb
      complexed with ufp; mutant
      1. chain a [41025]
    39. 1lcb
      complexed with dhf, tmp
      1. chain a [41028]
  3. Bacillus subtilis [TaxId: 1423] [55836] (5)
    1. 1bkp
      1. chain a [41029]
      2. chain b [41030]
    2. 1bsp
      complexed with po4
      1. chain a [41031]
      2. chain b [41032]
    3. 1b02
      complexed with c2f, ufp
      1. chain a [41035]
    4. 1bsf
      1. chain a [41033]
      2. chain b [41034]
    5. 1bko
      1. chain a [41036]
      2. chain b [41037]
      3. chain c [41038]
      4. chain d [41039]
  4. Bacteriophage T4 [TaxId: 10665] [55837] (1)
    1. 1tis
      complexed with po4
      1. chain a [41040]
  5. Pneumocystis carinii [TaxId: 4754] [55838] (2)
    1. 1f28
      complexed with f89, ump
      1. chain a [59608]
      2. chain b [59609]
      3. chain c [59610]
      4. chain d [59611]
    2. 1ci7
      complexed with cb3, ump
      1. chain a [41041]
      2. chain b [41042]
  6. Rat (Rattus norvegicus) [TaxId: 10116] [55839] (2)
    1. 2tsr
      complexed with d16, ump
      1. chain a [41043]
      2. chain b [41044]
      3. chain c [41045]
      4. chain d [41046]
    2. 1rts
      complexed with d16, ump
      1. chain a [41047]
      2. chain b [41048]
  7. Human (Homo sapiens) [TaxId: 9606] [55840] (5)
    1. 1hvy
      complexed with bme, d16, ump
      1. chain a [41049]
      2. chain b [41050]
      3. chain c [41051]
      4. chain d [41052]
    2. 1hzw
      complexed with po4
      1. chain a [61464]
      2. chain b [61465]
    3. 1hw3
      complexed with edo, so4
      1. chain a [41053]
    4. 1hw4
      complexed with edo, so4
      1. chain a [41054]
    5. 1i00
      complexed with d16, ump
      1. chain a [61475]
      2. chain b [61476]
2. Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain [55841]
  1. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [88964] (2)
    1. 1j3k
      complexed with ndp, ump, wra; mutant
      1. chain c [84072]
      2. chain d [84073]
    2. 1j3i
      complexed with ndp, ump, wra
      1. chain c [84064]
      2. chain d [84065]
  2. Cryptosporidium hominis [TaxId: 237895] [100887] (8)
    1. 1j3j
      complexed with cp6, ndp, ump; mutant
      1. chain c [84068]
      2. chain d [84069]
    2. 1sej
      Q5CGA3 Q27552
      complexed with f89, ndp, ump
      1. region a:233-521 [105456]
      2. region b:233-521 [105458]
      3. region c:233-521 [105460]
      4. region d:233-521 [105462]
      5. region e:233-521 [105464]
    3. 1qzf
      complexed with cb3, fol, ndp, ump
      1. region a:181-521 [96634]
      2. region b:181-521 [96636]
      3. region c:181-521 [96638]
      4. region d:181-521 [96640]
      5. region e:181-521 [96642]
    4. 2oip
      automatically matched to d1qzfa2
      complexed with cb3, mtx, ndp, ump; mutant
      1. region a:181-521 [148785]
    5. 2oip
      automatically matched to d1qzfa2
      complexed with cb3, mtx, ndp, ump; mutant
      1. region b:181-521 [148787]
    6. 2oip
      automatically matched to d1qzfa2
      complexed with cb3, mtx, ndp, ump; mutant
      1. region c:186-521 [148789]
    7. 2oip
      automatically matched to d1qzfa2
      complexed with cb3, mtx, ndp, ump; mutant
      1. region d:181-521 [148791]
    8. 2oip
      automatically matched to d1qzfa2
      complexed with cb3, mtx, ndp, ump; mutant
      1. region e:181-521 [148793]
3. dCMP hydroxymethylase [55843]
  1. Bacteriophage T4 [TaxId: 10665] [55844] (3)
    1. 1b5e
      complexed with cmp
      1. chain a [41056]
      2. chain b [41057]
    2. 1b5d
      complexed with cmp
      1. chain a [41058]
      2. chain b [41059]
    3. 1b49
      complexed with po4
      1. chain a [41060]
      2. chain c [41061]