Structural Classification of Proteins
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Family: N-acetylmuramoyl-L-alanine amidase-like

Family 2 zinc amidase;

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: N-acetylmuramoyl-L-alanine amidase-like [55845]
    contains mixed beta-sheet
  4. Superfamily: N-acetylmuramoyl-L-alanine amidase-like [55846]
    link to SUPERFAMILY database - Superfamily
  5. Family: N-acetylmuramoyl-L-alanine amidase-like [55847]
    Family 2 zinc amidase;

Protein Domains:

  1. AmpD protein [82775]
    1. Citrobacter freundii [TaxId: 546] [82776] (1)
      1. 1j3g picpic
        complexed with zn
        1. chain a [77075] picpiclink
  2. Bacteriophage T7 lysozyme (Zn amidase) [55848]
    1. Bacteriophage T7 [TaxId: 10760] [55849] (2)
      1. 1lba picpic
        complexed with zn; mutant
        1. chain a [41062] picpiclink
      2. 1aro picpicxref
        complexed with hg; mutant
        1. chain l [41063] picpiclink
  3. Peptidoglycan recognition protein-lb (Cg14704) [90024]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [90025] (1)
      1. 1oht picpic
        complexed with egl, mse, tla, zn
        1. chain a [87036] picpiclink
  4. Peptidoglycan-recognition protein-SA (Cg11709) [111139]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [111140] (2)
      SQ Q9VYX7 37-203 ! SQ Q9VYX7
      1. 1sxr picpic
        complexed with edo, so4
        1. chain a [106101] picpiclink
        2. chain b [106102] picpiclink
      2. 1s2j picpic
        complexed with po4
        1. chain a [105227] picpiclink
        2. chain b [105228] picpiclink
  5. Peptidoglycan recognition protein I-alpha [111141]
    1. Human (Homo sapiens) [TaxId: 9606] [111142] (5)
      SQ Q96LB9 177-341
      1. 1sk4 picpic
        complexed with na
        1. chain a [105664] picpiclink
      2. 2aph picpic
        automatically matched to d1sk3a_
        complexed with amu, nh2, so4
        1. region a:177-341 [127126] picpiclink
      3. 2aph picpic
        automatically matched to d1sk3a_
        complexed with amu, nh2, so4
        1. region b:177-341 [127127] picpiclink
      4. 1twq picpic
        complexed with amu, nh2, ni
        1. chain a [112766] picpiclink
      5. 1sk3 picpic
        complexed with ni, so4
        1. chain a [105663] picpiclink
  6. N-acetylmuramoyl-L-alanine amidase PlyG [143780]
    1. Bacillus anthracis [TaxId: 1392] [143781] (6)
      SQ Q81WA9 1-157
      Prophage LambdaBa02
      1. 1yb0 picpic
        complexed with po4, zn
        1. region a:1-157 [122865] picpiclink
      2. 1yb0 picpic
        automatically matched to 1YB0 A:1-157
        complexed with po4, zn
        1. region b:1-157 [122866] picpiclink
      3. 1yb0 picpic
        automatically matched to 1YB0 A:1-157
        complexed with po4, zn
        1. region c:1-157 [122867] picpiclink
      4. 2ar3 picpic
        complexed with po4, zn; mutant
        1. region a:1-157 [127188] picpiclink
      5. 2ar3 picpic
        automatically matched to 2AR3 A:1-157
        complexed with po4, zn; mutant
        1. region b:1-157 [127189] picpiclink
      6. 2ar3 picpic
        automatically matched to 2AR3 A:1-157
        complexed with po4, zn; mutant
        1. region c:1-157 [127190] picpiclink
  7. Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain [143782]
    1. Escherichia coli [TaxId: 562] [143783] (2)
      SQ P75820 22-194
      1. 2bgx picpicxref
        complexed with zn
        1. region a:7-179 [128505] picpiclink
      2. 2bh7 picpicxref
        automatically matched to 2BGX A:7-179
        complexed with so4, zn
        1. region a:7-179 [128517] picpiclink
  8. Peptidoglycan-recognition protein-LC [143784]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [143785] (3)
      SQ Q9GNK5 335-499! SQ Q9GNK5 355-520
      Cg4432; different splicing isoforms
      1. 2f2l picpic
        complexed with cit, mld, nag, so4
        1. region x:335-499 [132844] picpiclink
      2. 2f2l picpic
        automatically matched to 1Z6I A:355-520
        complexed with cit, mld, nag, so4
        1. region a:355-520 [132843] picpiclink
      3. 1z6i picpic
        complexed with nag, so4
        1. region a:355-520 [124522] picpiclink
  9. Peptidoglycan recognition protein, PGRP-S [143786]
    1. Human (Homo sapiens) [TaxId: 9606] [143787] (1)
      SQ O75594 30-196
      1. 1yck picpic
        1. region a:9-175 [122968] picpiclink
  10. Peptidoglycan-recognition protein-LE [143788]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [143789] (4)
      SQ Q9VXN9 174-344
      1. 2cb3 picpic
        complexed with gol, mld; mutant
        1. region a:174-344 [130175] picpiclink
      2. 2cb3 picpic
        automatically matched to 2CB3 A:174-344
        complexed with gol, mld; mutant
        1. region b:175-344 [130176] picpiclink
      3. 2cb3 picpic
        automatically matched to 2CB3 A:174-344
        complexed with gol, mld; mutant
        1. region c:174-344 [130177] picpiclink
      4. 2cb3 picpic
        automatically matched to 2CB3 A:174-344
        complexed with gol, mld; mutant
        1. region d:174-344 [130178] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk